RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 HPF1Q9NWY4 346 aa12.61□□□□□ -0.39
USP38-201ENST00000307017 UXTQ9UBK9 157 aaPredicted RBP12.61□□□□□ -0.39
USP38-201ENST00000307017 ASF1AQ9Y294 204 aa12.61□□□□□ -0.39
USP38-201ENST00000307017 PCDHB9Q9Y5E1 797 aa12.61□□□□□ -0.39
USP38-201ENST00000307017 ULK1O75385 1050 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 IGFBP5P24593 272 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 MTPNP58546 118 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 CYP2A13Q16696 494 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 TMEM214Q6NUQ4 689 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 CXXC5Q7LFL8 322 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 ADCY4Q8NFM4 1077 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 FRMD8Q9BZ67 464 aaPredicted RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 PCDHAC1Q9H158 963 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 LIN28AQ9H9Z2 209 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 GULP1Q9UBP9 304 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 APOC4-APOC2K7ER74 178 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 CPNE3O75131 537 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 APOC2P02655 101 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 TFPTP0C1Z6 253 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 GNA12Q03113 381 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 STAG3L4Q8TBR4 150 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 DNASE1L2Q92874 299 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 P2RX7Q99572 595 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 GANQ9H2C0 597 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SEMA3GQ9NS98 782 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 A0A0A0MRY4 1105 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 UQCRBP14927 111 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SNRPFP62306 86 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 LAPTM4AQ15012 233 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SWI5Q1ZZU3 235 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 CUZD1Q86UP6 607 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SIDT2Q8NBJ9 832 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 RERGQ96A58 199 aaPredicted RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 SPATA13Q96N96 652 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 LRRC4CQ9HCJ2 640 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 DMTF1Q9Y222 760 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 A0A1W2PQH9 124 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 TCRBV5S4A2TA0A5A2 114 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 NDUFS2O75306 463 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 BRCC3P46736 316 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 FMO1Q01740 532 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 COLEC12Q5KU26 742 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 ANKRD22Q5VYY1 191 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 ZNF598Q86UK7 904 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 CXorf40BQ96DE9 158 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 MRPL17Q9NRX2 175 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 COQ3Q9NZJ6 369 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 LEF1Q9UJU2 399 aaPredicted RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 RWDD3Q9Y3V2 267 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 ZNF780BQ9Y6R6 833 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 FAM240BA0A1B0GVZ2 78 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 CCDC162PA2VCL2 907 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 GSC2O15499 205 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SLC25A14O95258 325 aaPredicted RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 UQCRC1P31930 480 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 TRAP1Q12931 704 aaKnown RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 GLYATQ6IB77 296 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 HMGN2P46Q86SG4 172 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 AMER2Q8N7J2 671 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 ZNF781Q8N8C0 355 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 FATE1Q969F0 183 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 CDCA5Q96FF9 252 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 PDCD2LQ9BRP1 358 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 WDR18Q9BV38 432 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 PRRG4Q9BZD6 226 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 ZNF518BQ9C0D4 1074 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 CHRAC1Q9NRG0 131 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 GRHL1Q9NZI5 618 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 UGT2B17O75795 530 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SERPINA6P08185 405 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 THOP1P52888 689 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 SUN5Q8TC36 379 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 ART4Q93070 314 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 TCF12Q99081 682 aa12.6□□□□□ -0.39
USP38-201ENST00000307017 GBA2Q9HCG7 927 aaPredicted RBP12.6□□□□□ -0.39
USP38-201ENST00000307017 MYOCOSA0A1B0GUC4 107 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 PGRMC2O15173 223 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 HCN1O60741 890 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 SLC22A3O75751 556 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 PRH1P02810 166 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 MAT2AP31153 395 aaKnown RBP12.59□□□□□ -0.39
USP38-201ENST00000307017 ZNF268Q14587 947 aaPredicted RBP12.59□□□□□ -0.39
USP38-201ENST00000307017 MNTQ99583 582 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 GPATCH1Q9BRR8 931 aaKnown RBP12.59□□□□□ -0.39
USP38-201ENST00000307017 NMUR1Q9HB89 426 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 TBX1O43435 398 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 SUV39H1O43463 412 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 HSPA7P48741 367 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 PGDP52209 483 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 KATNAL2Q8IYT4 538 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 ZMIZ2Q8NF64 920 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 IL22Q9GZX6 179 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 PNPLA3Q9NST1 481 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 ZCCHC11Q5TAX3 1644 aaKnown RBP12.59□□□□□ -0.39
USP38-201ENST00000307017 TRIM64A6NGJ6 449 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 H3BMM5 538 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 PDLIM1O00151 329 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 CHADO15335 359 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 MGRN1O60291 552 aa12.59□□□□□ -0.39
USP38-201ENST00000307017 FOXD2O60548 495 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms