RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 PCDHGC4Q9Y5F7 938 aa9.43□□□□□ -0.9
PHGDH-228ENST00000641847 WASF2Q9Y6W5 498 aa9.43□□□□□ -0.9
PHGDH-228ENST00000641847 PTPN13Q12923 2485 aa9.43□□□□□ -0.9
PHGDH-228ENST00000641847 COL6A6A6NMZ7 2263 aa9.43□□□□□ -0.9
PHGDH-228ENST00000641847 MYLKQ15746 1914 aa9.43□□□□□ -0.9
PHGDH-228ENST00000641847 PLXND1Q9Y4D7 1925 aa9.43□□□□□ -0.9
PHGDH-228ENST00000641847 LOC285095A0A1B0GVY8 99 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 TRAFD1O14545 582 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 ALOX15BO15296 676 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 HTRA2O43464 458 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 TLX3O43711 291 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PCDHGA12O60330 932 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 FZD6O60353 706 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 DFNA5O60443 496 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PPFIA2O75334 1257 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 LEFTY1O75610 366 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PGLSO95336 258 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 NDST3O95803 873 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 CPP00450 1065 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PRNPP04156 253 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 FGF1P05230 155 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 TUBBP07437 444 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 ACADMP11310 421 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 MLNP12872 115 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 HLA-DPA1P20036 260 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 GRIA4P48058 902 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PSMD8P48556 350 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 CSRP3P50461 194 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 ARL4CP56559 192 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 SESN2P58004 480 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 TLE3Q04726 772 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 DHX9Q08211 1270 aaKnown RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 CDH17Q12864 832 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 MTM1Q13496 603 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 HIF1AQ16665 826 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 DNAJC21Q5F1R6 531 aaKnown RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 ARSIQ5FYB1 569 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 SIRPB2Q5JXA9 342 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 FNBP1LQ5T0N5 605 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 GDPD4Q6W3E5 623 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 DSG4Q86SJ6 1040 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 CAND1Q86VP6 1230 aaKnown RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 CACUL1Q86Y37 369 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PDIK1LQ8N165 341 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 EIF1ADQ8N9N8 165 aaKnown RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 DNAAF3Q8N9W5 541 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 SNX19Q92543 992 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 ZNF641Q96N77 438 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 ADGRE3Q9BY15 652 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 FRMD8Q9BZ67 464 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 FOXP3Q9BZS1 431 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PCED1AQ9H1Q7 454 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 SUV39H2Q9H5I1 410 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PRSS16Q9NQE7 514 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 WSB2Q9NYS7 404 aaPredicted RBP9.42□□□□□ -0.9
PHGDH-228ENST00000641847 PTPRBP23467 1997 aa9.42□□□□□ -0.9
PHGDH-228ENST00000641847 A0A1B0GVT2 93 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 TSPAN11A1L157 253 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 METTL12A8MUP2 240 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 C1QTNF3-AMACRE9PGA6 284 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 AP3B1O00203 1094 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 KPNA3O00505 521 aaPredicted RBP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 AVILO75366 819 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 BANF1O75531 89 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 PRLP01236 227 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 IL1BP01584 269 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 PDHA1P08559 390 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 MGAT1P26572 445 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 MAGEA3P43357 314 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 CSNK1EP49674 416 aaKnown RBP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 COPAP53621 1224 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 EPHB1P54762 984 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 TMPRSS3P57727 454 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 TARDBPQ13148 414 aaKnown RBP eCLIP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 CAMK2GQ13555 558 aaPredicted RBP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 RTP5Q14D33 572 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 SLC1A5Q15758 541 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 QPCTQ16769 361 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 POM121L1PQ3SYA9 428 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 BBS9Q3SYG4 887 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 MSS51Q4VC12 460 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 ZNF805Q5CZA5 627 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 DENND5AQ6IQ26 1287 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 RANBP10Q6VN20 620 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 CENPUQ71F23 418 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 CCDC25Q86WR0 208 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 ZSWIM9Q86XI8 627 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 MMAAQ8IVH4 418 aaKnown RBP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 TMIEQ8NEW7 156 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 AENQ8WTP8 325 aaKnown RBP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 ECHDC3Q96DC8 303 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 KLHL32Q96NJ5 620 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 FAM129BQ96TA1 746 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 RSPH9Q9H1X1 276 aaPredicted RBP9.41□□□□□ -0.9
PHGDH-228ENST00000641847 FBRSQ9HAH7 460 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 SAYSD1Q9NPB0 183 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 ITM2CQ9NQX7 267 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 SYBUQ9NX95 663 aa9.41□□□□□ -0.9
PHGDH-228ENST00000641847 EIF2B4Q9UI10 523 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms