RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 BNC2Q6ZN30 1099 aaPredicted RBP14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 TAS2R42Q7RTR8 314 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 BNIPLQ7Z465 357 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 PPWD1Q96BP3 646 aaKnown RBP14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 HAUS8Q9BT25 410 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 UPF3AQ9H1J1 476 aaKnown RBP14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 RHOJQ9H4E5 214 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 SCN4AP35499 1836 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 ZNF487B1APH4 448 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 J3QRK9 145 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 CSF2RAP15509 400 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 PAMP19021 973 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 SLC6A4P31645 630 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 CASP2P42575 452 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 LHX8Q68G74 356 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 ERI1Q8IV48 349 aaKnown RBP14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 DSELQ8IZU8 1212 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 FBXL8Q96CD0 374 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 PGAP3Q96FM1 320 aaPredicted RBP14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 COQ10BQ9H8M1 238 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 TRNAU1APQ9NX07 287 aaKnown RBP14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 TLR6Q9Y2C9 796 aa14.46□□□□□ -0.09
SHROOM1-208ENST00000617339 EOMESO95936 686 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 LRG1P02750 347 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 OCM2P0CE71 109 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 OCMP0CE72 109 aaPredicted RBP14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 ATP5C1P36542 298 aaKnown RBP14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 ART3Q13508 389 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 CCDC92Q53HC0 331 aaPredicted RBP14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 TXNDC8Q6A555 127 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 CENPLQ8N0S6 344 aaPredicted RBP14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 PCDH20Q8N6Y1 951 aaKnown RBP14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 FCRL5Q96RD9 977 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC22A12Q96S37 553 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 SERPINI1Q99574 410 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 TMEM161AQ9NX61 479 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 SNX13Q9Y5W8 968 aa14.46□□□□□ -0.1
SHROOM1-208ENST00000617339 IQCF5A8MTL0 148 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 GIPC1O14908 333 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 FGF10O15520 208 aaPredicted RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CRCPO75575 148 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 RNASEH2AO75792 299 aaKnown RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 ATF6P18850 670 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 TYMPP19971 482 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 TACR2P21452 398 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 PDAP1Q13442 181 aaKnown RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CDH18Q13634 790 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 ATXN7L2Q5T6C5 722 aaPredicted RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 LRRC8EQ6NSJ5 796 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CYP2R1Q6VVX0 501 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 RPL10LQ96L21 214 aaKnown RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 OSBPL6Q9BZF3 934 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 RNF38Q9H0F5 515 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CDC14AQ9UNH5 594 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 SORCS3Q9UPU3 1222 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 RNF11Q9Y3C5 154 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 SH3PXD2BA1X283 911 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 MAGEB16A2A368 324 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 PLOD2O00469 737 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 GPC4O75487 556 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 OAZ2O95190 189 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 AIF1P55008 147 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 DSC1Q08554 894 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 APOFQ13790 326 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 FSCBQ5H9T9 825 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 IL23RQ5VWK5 629 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 NADSYN1Q6IA69 706 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 BTN2A3PQ96KV6 586 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 UROC1Q96N76 676 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 KLHL32Q96NJ5 620 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CIB1Q99828 191 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 MARCH5Q9NX47 278 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 RIMS3Q9UJD0 308 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 SCML2Q9UQR0 700 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CORO1AP31146 461 aaKnown RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 HALP42357 657 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CD300CQ08708 224 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 PPP1R3AQ16821 1122 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 MAP7D1Q3KQU3 841 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 LSM12Q3MHD2 195 aaKnown RBP14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 ZNF786Q8N393 782 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 TSPAN18Q96SJ8 248 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 TRIM8Q9BZR9 551 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 TBC1D23Q9NUY8 699 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 CCDC167Q9P0B6 97 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 VPS28Q9UK41 221 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 COQ6Q9Y2Z9 468 aa14.45□□□□□ -0.1
SHROOM1-208ENST00000617339 DNAH14Q0VDD8 3507 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 C7orf72A4D263 438 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC38A8A6NNN8 435 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 K7ERQ8 282 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 BIRC5O15392 142 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 PIK3R1P27986 724 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 KCNC1P48547 511 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 OXCT1P55809 520 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 CEACAM7Q14002 265 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 PFKFB4Q16877 469 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 POM121L1PQ3SYA9 428 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 ZRANB3Q5FWF4 1079 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms