RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PCDHGB6Q9Y5F9 930 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 AKAP9Q99996 3911 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CSMD2Q7Z408 3487 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 RTTNQ86VV8 2226 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 BAZ2BQ9UIF8 2168 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 APCP25054 2843 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 MYH9P35579 1960 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 FAM171A2A8MVW0 826 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 M0R3H8 397 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 MEIS2O14770 477 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF213O14771 459 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 HNRNPRO43390 633 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 SYNCRIPO60506 623 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF217O75362 1048 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 DDAH2O95865 285 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 AMY1AP04745 511 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 DDCP20711 480 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 GABRR2P28476 465 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 RBMS1P29558 406 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 ANXA11P50995 505 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 MLLT10P55197 1068 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 NXPH1P58417 271 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 CYP4A11Q02928 519 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF844Q08AG5 666 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 ST3GAL1Q11201 340 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 BFSP1Q12934 665 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 PDGFRLQ15198 375 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 SLC35G1Q2M3R5 365 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 CD300EQ496F6 205 aaPredicted RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 FAAH2Q6GMR7 532 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 CAPRIN2Q6IMN6 1127 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 RETSATQ6NUM9 610 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 C16orf54Q6UWD8 224 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 NEK8Q86SG6 692 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 DENND1CQ8IV53 801 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 SFTPA1Q8IWL2 248 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 KBTBD3Q8NAB2 608 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 PDCD6IPQ8WUM4 868 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 RFFLQ8WZ73 363 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 DNASE2BQ8WZ79 361 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 MVB12AQ96EY5 273 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 FAM167AQ96KS9 214 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 MTMR9Q96QG7 549 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 MXRA8Q9BRK3 442 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 TLR10Q9BXR5 811 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 KRTAP2-2Q9BYT5 123 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 UNKQ9C0B0 810 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 NXF3Q9H4D5 531 aaKnown RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 TASP1Q9H6P5 420 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 PRKRIP1Q9H875 184 aaPredicted RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 POLR1BQ9H9Y6 1135 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 CCM2LQ9NUG4 571 aaPredicted RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 RRN3Q9NYV6 651 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 SUCLA2Q9P2R7 463 aaPredicted RBP4.57□□□□□ -1.68
LINC00540-201ENST00000611481 TNNQ9UQP3 1299 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 CDYLQ9Y232 598 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 TTLL3Q9Y4R7 772 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 YIPF1Q9Y548 306 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM131Q92545 1883 aa4.57□□□□□ -1.68
LINC00540-201ENST00000611481 CSPG4Q6UVK1 2322 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ARID2Q68CP9 1835 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 A6NCN8 305 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 VPS4BO75351 444 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 URI1O94763 535 aaPredicted RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 B3GAT3O94766 335 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 LATS1O95835 1130 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ONECUT2O95948 504 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 PYGLP06737 847 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ZFYP08048 801 aaPredicted RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 PDCP20941 246 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 CERS1P27544 350 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 OPRD1P41143 372 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 BRCC3P46736 316 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 IFNAR2P48551 515 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 PRIM2P49643 509 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 SLC5A3P53794 718 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 HAND2P61296 217 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 CYP4F2P78329 520 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 PRKG2Q13237 762 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 SRSF6Q13247 344 aaKnown RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ILKQ13418 452 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM119Q4V9L6 283 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 CCDC38Q502W7 563 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 KLHL22Q53GT1 634 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 C3orf38Q5JPI3 329 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 TOR2AQ5JU69 321 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 DCAF12L1Q5VU92 463 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 IZUMO3Q5VZ72 239 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 TPGS2Q68CL5 300 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 LAYNQ6UX15 382 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 USP45Q70EL2 814 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 FAM114A1Q8IWE2 563 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 HACE1Q8IYU2 909 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ADGRG5Q8IZF4 528 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 CMTM8Q8IZV2 173 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 OR8H2Q8N162 312 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 PRR18Q8N4B5 295 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 EID2Q8N6I1 236 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 B3GALNT2Q8NCR0 500 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 SPATA3Q8NHX4 192 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms