RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TRNAU1AP	Q9NX07	287 aa	Known RBP	10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	ANAPC7	Q9UJX3	599 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	SLC17A4	Q9Y2C5	497 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	TMEM98	Q9Y2Y6	226 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	PCDHGA4	Q9Y5G9	962 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	SMTNL1	A8MU46	457 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	PSMD11	O00231	422 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	PPM1D	O15297	605 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	SLC28A2	O43868	658 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	IVL	P07476	585 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	FAM87A	P0C7U9	286 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	IL4R	P24394	825 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	MPST	P25325	297 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	CSF2RB	P32927	897 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	SERPINB6	P35237	376 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	GJC1	P36383	396 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	ACTR1B	P42025	376 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	SSR1	P43307	286 aa	Known RBP	10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	GPR1	P46091	355 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	ZNF165	P49910	485 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	CDH6	P55285	790 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	ACTR1A	P61163	376 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	CYP4F2	P78329	520 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	DSC2	Q02487	901 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	ITK	Q08881	620 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	BIRC2	Q13490	618 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	PIGH	Q14442	188 aa	Predicted RBP	10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	KRT81	Q14533	505 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	NR1D2	Q14995	579 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	PRICKLE2	Q7Z3G6	844 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	ZNF761	Q86XN6	746 aa	Predicted RBP	10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	DTX1	Q86Y01	620 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	CPNE8	Q86YQ8	564 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	TEX26	Q8N6G2	289 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	NIPA2	Q8N8Q9	360 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	LRRN4	Q8WUT4	740 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	SCAMP4	Q969E2	229 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	OR2M4	Q96R27	311 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	AGAP2	Q99490	1192 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	NUP85	Q9BW27	656 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	KCTD5	Q9NXV2	234 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	TMEM9	Q9P0T7	183 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	SEPT10	Q9P0V9	454 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	TTLL3	Q9Y4R7	772 aa		10.49	□□□□□ -0.73
LSM4-205	ENST00000597776	TRBV23OR9-2	A0A075B6M9	112 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	INPP4B	O15327	924 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	FZD6	O60353	706 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	SERPINC1	P01008	464 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	FGF3	P11487	239 aa	Predicted RBP	10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	NFKBIA	P25963	317 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	TEAD1	P28347	426 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	GPR3	P46089	330 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	ARSD	P51689	593 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	NFKB2	Q00653	900 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	PTS	Q03393	145 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	DPT	Q07507	201 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	NR1I3	Q14994	352 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	RALGPS1	Q5JS13	557 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	NCBP2-AS2	Q69YL0	99 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	CAVIN1	Q6NZI2	390 aa	Known RBP	10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	ADAMTSL4	Q6UY14	1074 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	HTR3C	Q8WXA8	447 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	AP2M1	Q96CW1	435 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	SCARF2	Q96GP6	870 aa	Predicted RBP	10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	ARHGAP9	Q9BRR9	750 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	TRIM4	Q9C037	500 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	CDH19	Q9H159	772 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	AKAP7	Q9P0M2	348 aa	Predicted RBP	10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	IP6K2	Q9UHH9	426 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	CHKB	Q9Y259	395 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	PPIL1	Q9Y3C6	166 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	PRKAB1	Q9Y478	270 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	PCDHB11	Q9Y5F2	797 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	BSN	Q9UPA5	3926 aa		10.48	□□□□□ -0.73
LSM4-205	ENST00000597776	MYO18B	Q8IUG5	2567 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	IGHV1OR21-1	A0A087WYE8	117 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776		A0A087X0T9	212 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776		A0A0J9YYE9	177 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	HGS	O14964	777 aa	Predicted RBP	10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	EML2	O95834	649 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	TRBC1	P01850	177 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	ITGB2	P05107	769 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	CYP1A2	P05177	515 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	FAM228B	P0C875	321 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	GARS	P41250	739 aa	Known RBP	10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	ARSE	P51690	589 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	STC1	P52823	247 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	LIMK2	P53671	638 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	EPHB1	P54762	984 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	GALNT2	Q10471	571 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	DPYSL3	Q14195	570 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	IQCB1	Q15051	598 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	TBR1	Q16650	682 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	ATP13A4	Q4VNC1	1196 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	PYCR3	Q53H96	274 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	FIGN	Q5HY92	759 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	TMEM164	Q5U3C3	297 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	GALNT13	Q8IUC8	556 aa		10.47	□□□□□ -0.73

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