RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 SLC17A4Q9Y2C5 497 aa13.01□□□□□ -0.33
LIG1-212ENST00000596549 PCYT1BQ9Y5K3 369 aaPredicted RBP13.01□□□□□ -0.33
LIG1-212ENST00000596549 URB1O60287 2271 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 FADS2P1A8MWK0 482 aa13□□□□□ -0.33
LIG1-212ENST00000596549 PDE2AO00408 941 aaPredicted RBP13□□□□□ -0.33
LIG1-212ENST00000596549 PSTPIP1O43586 416 aa13□□□□□ -0.33
LIG1-212ENST00000596549 SPOPO43791 374 aa13□□□□□ -0.33
LIG1-212ENST00000596549 CLDN7O95471 211 aa13□□□□□ -0.33
LIG1-212ENST00000596549 RPLP0P05388 317 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 CA4P22748 312 aa13□□□□□ -0.33
LIG1-212ENST00000596549 CES1P23141 567 aa13□□□□□ -0.33
LIG1-212ENST00000596549 ACTN2P35609 894 aa13□□□□□ -0.33
LIG1-212ENST00000596549 CDKN2BP42772 138 aa13□□□□□ -0.33
LIG1-212ENST00000596549 SLC1A1P43005 524 aa13□□□□□ -0.33
LIG1-212ENST00000596549 GPR1P46091 355 aa13□□□□□ -0.33
LIG1-212ENST00000596549 GNPDA1P46926 289 aa13□□□□□ -0.33
LIG1-212ENST00000596549 LSSP48449 732 aa13□□□□□ -0.33
LIG1-212ENST00000596549 MAZP56270 477 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 RPL26P61254 145 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 CCL7P80098 99 aa13□□□□□ -0.33
LIG1-212ENST00000596549 ADCY2Q08462 1091 aa13□□□□□ -0.33
LIG1-212ENST00000596549 AP1B1Q10567 949 aa13□□□□□ -0.33
LIG1-212ENST00000596549 SPIDRQ14159 915 aa13□□□□□ -0.33
LIG1-212ENST00000596549 PRKD1Q15139 912 aaPredicted RBP13□□□□□ -0.33
LIG1-212ENST00000596549 C14orf28Q4W4Y0 310 aa13□□□□□ -0.33
LIG1-212ENST00000596549 DOK6Q6PKX4 331 aa13□□□□□ -0.33
LIG1-212ENST00000596549 IGF2-ASQ6U949 168 aa13□□□□□ -0.33
LIG1-212ENST00000596549 ADAMTSL4Q6UY14 1074 aa13□□□□□ -0.33
LIG1-212ENST00000596549 C17orf82Q86X59 251 aaPredicted RBP13□□□□□ -0.33
LIG1-212ENST00000596549 RFX6Q8HWS3 928 aa13□□□□□ -0.33
LIG1-212ENST00000596549 FAM46DQ8NEK8 389 aa13□□□□□ -0.33
LIG1-212ENST00000596549 WDR48Q8TAF3 677 aa13□□□□□ -0.33
LIG1-212ENST00000596549 PATE1Q8WXA2 126 aa13□□□□□ -0.33
LIG1-212ENST00000596549 TADA1Q96BN2 335 aa13□□□□□ -0.33
LIG1-212ENST00000596549 EID2BQ96D98 161 aa13□□□□□ -0.33
LIG1-212ENST00000596549 SCARF2Q96GP6 870 aaPredicted RBP13□□□□□ -0.33
LIG1-212ENST00000596549 COX14Q96I36 57 aa13□□□□□ -0.33
LIG1-212ENST00000596549 RBSNQ9H1K0 784 aa13□□□□□ -0.33
LIG1-212ENST00000596549 SPATS2LQ9NUQ6 558 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 DDX56Q9NY93 547 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 RPL26L1Q9UNX3 145 aaKnown RBP13□□□□□ -0.33
LIG1-212ENST00000596549 RNF215Q9Y6U7 377 aa13□□□□□ -0.33
LIG1-212ENST00000596549 C1orf232A0A0U1RR37 186 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 PPP1R12AO14974 1030 aaPredicted RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 IVLP07476 585 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 KRT10P13645 584 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 GLB1P16278 677 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 FECHP22830 423 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 MAGEA1P43355 309 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 LLGL1Q15334 1064 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 HENMT1Q5T8I9 393 aaKnown RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 SPOCD1Q6ZMY3 1216 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 TMPRSS9Q7Z410 1059 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 SPRED1Q7Z699 444 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 CCNJLQ8IV13 435 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 NDUFAF2Q8N183 169 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 FGF11Q92914 225 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 IMP4Q96G21 291 aaKnown RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 BBC3Q96PG8 261 aaPredicted RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 RIOK2Q9BVS4 552 aaKnown RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 DPEP2Q9H4A9 486 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 HAUS2Q9NVX0 235 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 TRNAU1APQ9NX07 287 aaKnown RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 SAE1Q9UBE0 346 aaPredicted RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 APPL1Q9UKG1 709 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 DNPEPQ9ULA0 475 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 PLEKHM1Q9Y4G2 1056 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 PCDHGA8Q9Y5G5 932 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 ALG6Q9Y672 507 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 OAS3Q9Y6K5 1087 aaKnown RBP12.99□□□□□ -0.33
LIG1-212ENST00000596549 BPTFQ12830 3046 aa12.99□□□□□ -0.33
LIG1-212ENST00000596549 hCG_1818297A0A087WSY0 165 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 RCCD1A6NED2 376 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 SOWAHDA6NJG2 315 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 CDRT15L2A8MXV6 281 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 ANKRD66B4E2M5 251 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 INPP4BO15327 924 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 MT-CYBP00156 380 aaPredicted RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 PTPN3P26045 913 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 ADCY8P40145 1251 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 SPINT3P49223 89 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 ZNF75DP51815 510 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 PCBP4P57723 403 aaKnown RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 CTBSQ01459 385 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 TLE3Q04726 772 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 CCDC173Q0VFZ6 552 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 ILF3Q12906 894 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIG1-212ENST00000596549 PDK1Q15118 436 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 C11orf63Q6NUN7 778 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 SLC30A9Q6PML9 568 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 LYSMD3Q7Z3D4 306 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 ZNF438Q7Z4V0 828 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 SPACA3Q8IXA5 215 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 NRSN1Q8IZ57 195 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 NAGSQ8N159 534 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 OR6C4Q8NGE1 309 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 SPATA22Q8NHS9 363 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 KRT35Q92764 455 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 GRAMD1AQ96CP6 724 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 LIN37Q96GY3 246 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms