RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SCAMP1O15126 338 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 ZRANB2O95218 330 aaKnown RBP eCLIP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 LDOC1O95751 146 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TRBC1P01850 177 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 PCCBP05166 539 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 ALPIP09923 528 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 CYP2A6P11509 494 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TGM2P21980 687 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 CTNNA2P26232 953 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 MSX1P28360 303 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TRIM23P36406 574 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 NR2C2P49116 596 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 RPL26P61254 145 aaKnown RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 ITKQ08881 620 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 AP1B1Q10567 949 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 DNAJC3Q13217 504 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 INPP5AQ14642 412 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 LLGL1Q15334 1064 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 ODF2Q5BJF6 829 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 ESRP1Q6NXG1 681 aaKnown RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 BBS12Q6ZW61 710 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 USP45Q70EL2 814 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 HSD11B1LQ7Z5J1 315 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TSPAN33Q86UF1 283 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 PHACTR4Q8IZ21 702 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 RBFAQ8N0V3 343 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 PAF1Q8N7H5 531 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 GATA6Q92908 595 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TADA1Q96BN2 335 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 DTD2Q96FN9 168 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 RBM41Q96IZ5 413 aaKnown RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TBATAQ96M53 351 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 HERPUD2Q9BSE4 406 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 DESI2Q9BSY9 194 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 APOOQ9BUR5 198 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 CEP41Q9BYV8 373 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TCEAL2Q9H3H9 227 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 RUBCNLQ9H714 662 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 HAUS2Q9NVX0 235 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 NLGN3Q9NZ94 848 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 TRIM10Q9UDY6 481 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 RPL26L1Q9UNX3 145 aaKnown RBP11.21□□□□□ -0.61
SMAD4-211ENST00000590499 CHKBQ9Y259 395 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 MSRB2Q9Y3D2 182 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 OR1A2Q9Y585 309 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 PCDHA3Q9Y5H8 950 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 CSNK1G3Q9Y6M4 447 aa11.21□□□□□ -0.61
SMAD4-211ENST00000590499 APC2O95996 2303 aa11.21□□□□□ -0.62
SMAD4-211ENST00000590499 ACACAQ13085 2346 aa11.21□□□□□ -0.62
SMAD4-211ENST00000590499 MYLKQ15746 1914 aa11.21□□□□□ -0.62
SMAD4-211ENST00000590499 SCN8AQ9UQD0 1980 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 LY6G6EA0A0G2JKS1 128 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 A0A0U1RQS6 177 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 K7ESM1 405 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 FFAR2O15552 330 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 AQP9O43315 295 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 NEBLO76041 1014 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 HOXC4P09017 264 aaPredicted RBP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 CKMT2P17540 419 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 CTPS1P17812 591 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 ACP1P24666 158 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 NFKBIAP25963 317 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 PTPN3P26045 913 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 PTPN7P35236 360 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 HNF1BP35680 557 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 CD86P42081 329 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 KIAA1024LP59773 190 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 WASHC5Q12768 1159 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 ACOX1Q15067 660 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 SMAD1Q15797 465 aaKnown RBP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 SLC14A2Q15849 920 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 CDKN3Q16667 212 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 ALG11Q2TAA5 492 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 KAZNQ674X7 775 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 KCTD16Q68DU8 428 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 CRTC1Q6UUV9 634 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 B4GALNT4Q76KP1 1039 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 BZW1Q7L1Q6 419 aaKnown RBP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 TMPRSS7Q7RTY8 843 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 TECPR1Q7Z6L1 1165 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 KIAA1328Q86T90 577 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 NT5DC3Q86UY8 548 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 FAM181AQ8N9Y4 354 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 KIAA1524Q8TCG1 905 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 BTN2A2Q8WVV5 523 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 ALG3Q92685 438 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 FUBP1Q96AE4 644 aaKnown RBP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 NUS1Q96E22 293 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 IMP4Q96G21 291 aaKnown RBP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 TRIB3Q96RU7 358 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 LYSMD1Q96S90 227 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 LRRC61Q9BV99 259 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 PCDH9Q9HC56 1237 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 APOBEC3BQ9UH17 382 aaKnown RBP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 EFR3BQ9Y2G0 817 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.2□□□□□ -0.62
SMAD4-211ENST00000590499 U3KQA8 63 aa11.2□□□□□ -0.62
SMAD4-211ENST00000590499 BPTFQ12830 3046 aa11.19□□□□□ -0.62
SMAD4-211ENST00000590499 COL27A1Q8IZC6 1860 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms