RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FASLGP48023 281 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 PER3P56645 1201 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 BCL2L1Q07817 233 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 CHAF1BQ13112 559 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 CDO1Q16878 200 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 TPD52L1Q16890 204 aaPredicted RBP11.03□□□□□ -0.64
VPS53-207ENST00000570510 ZXDCQ2QGD7 858 aaPredicted RBP11.03□□□□□ -0.64
VPS53-207ENST00000570510 CCDC183Q5T5S1 534 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 RAET1GQ6H3X3 334 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 NLRP14Q86W24 1093 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 MCEMP1Q8IX19 187 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 RHOT1Q8IXI2 618 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 TMEM35BQ8NCS4 154 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 SLC37A2Q8TED4 501 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 VOPP1Q96AW1 172 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.03□□□□□ -0.64
VPS53-207ENST00000570510 ING2Q9H160 280 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 PLCB1Q9NQ66 1216 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 UBA2Q9UBT2 640 aaPredicted RBP11.03□□□□□ -0.64
VPS53-207ENST00000570510 ITGB1BP2Q9UKP3 347 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 ITPR3Q14573 2671 aa11.02□□□□□ -0.64
VPS53-207ENST00000570510 RASSF9O75901 435 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 LRIG2O94898 1065 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 ZNF28P17035 718 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 ADRA1BP35368 520 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 FLT3P36888 993 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 POLD2P49005 469 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 RPS15P62841 145 aaKnown RBP11.02□□□□□ -0.65
VPS53-207ENST00000570510 CDK18Q07002 472 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 IL11RAQ14626 422 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 MAN2A1Q16706 1144 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 ISM2Q6H9L7 571 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 CYB5D1Q6P9G0 228 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 SASS6Q6UVJ0 657 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 GBP6Q6ZN66 633 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 HPS6Q86YV9 775 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 CREBRFQ8IUR6 639 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 IQCKQ8N0W5 287 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 OR2M4Q96R27 311 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 OR6C1Q96RD1 312 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 UNKQ9C0B0 810 aaKnown RBP11.02□□□□□ -0.65
VPS53-207ENST00000570510 ACTL8Q9H568 366 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 CNOT8Q9UFF9 292 aaKnown RBP11.02□□□□□ -0.65
VPS53-207ENST00000570510 ENTPD4Q9Y227 616 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 PCDHGB7Q9Y5F8 929 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 PCDHGA6Q9Y5G7 932 aa11.02□□□□□ -0.65
VPS53-207ENST00000570510 ARHGEF17Q96PE2 2063 aaPredicted RBP11.02□□□□□ -0.65
VPS53-207ENST00000570510 FAM170AA1A519 330 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 C21orf140B9A014 251 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 KRT86O43790 486 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 FUCA1P04066 466 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 IVLP07476 585 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 PLEKP08567 350 aaPredicted RBP11.01□□□□□ -0.65
VPS53-207ENST00000570510 PRF1P14222 555 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SLC2A4P14672 509 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 EPHB2P29323 1055 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SCNN1AP37088 669 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SEPHS1P49903 392 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 YBEYP58557 167 aaPredicted RBP11.01□□□□□ -0.65
VPS53-207ENST00000570510 CDK3Q00526 305 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 PDE1BQ01064 536 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 CYTH1Q15438 398 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 PARP15Q460N3 678 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 CPZQ66K79 652 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SP5Q6BEB4 398 aaPredicted RBP11.01□□□□□ -0.65
VPS53-207ENST00000570510 GJB7Q6PEY0 223 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 MARK2Q7KZI7 788 aaKnown RBP11.01□□□□□ -0.65
VPS53-207ENST00000570510 DPPA4Q7L190 304 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SRLQ86TD4 932 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SLC9B2Q86UD5 537 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 GALNT13Q8IUC8 556 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 SFRP1Q8N474 314 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 LZTR1Q8N653 840 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 GPT2Q8TD30 523 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 PNPLA2Q96AD5 504 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 CRACR2AQ9BSW2 395 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 TEX101Q9BY14 249 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 FRMD8Q9BZ67 464 aaPredicted RBP11.01□□□□□ -0.65
VPS53-207ENST00000570510 NAT10Q9H0A0 1025 aaKnown RBP11.01□□□□□ -0.65
VPS53-207ENST00000570510 EPB41L1Q9H4G0 881 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 LHX3Q9UBR4 397 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 PLEKHM1Q9Y4G2 1056 aa11.01□□□□□ -0.65
VPS53-207ENST00000570510 PRRC2CQ9Y520 2896 aaKnown RBP11□□□□□ -0.65
VPS53-207ENST00000570510 OTOGQ6ZRI0 2925 aa11□□□□□ -0.65
VPS53-207ENST00000570510 ANKRD36A6QL64 1941 aa11□□□□□ -0.65
VPS53-207ENST00000570510 LRRC10BA6NIK2 292 aa11□□□□□ -0.65
VPS53-207ENST00000570510 A6NL46 340 aa11□□□□□ -0.65
VPS53-207ENST00000570510 BECN2A8MW95 431 aa11□□□□□ -0.65
VPS53-207ENST00000570510 FAM72CH0Y354 149 aa11□□□□□ -0.65
VPS53-207ENST00000570510 PALMO75781 387 aa11□□□□□ -0.65
VPS53-207ENST00000570510 CBX6O95503 412 aa11□□□□□ -0.65
VPS53-207ENST00000570510 ASMTLO95671 621 aa11□□□□□ -0.65
VPS53-207ENST00000570510 TPM2P07951 284 aa11□□□□□ -0.65
VPS53-207ENST00000570510 SDC4P31431 198 aa11□□□□□ -0.65
VPS53-207ENST00000570510 GPR1P46091 355 aa11□□□□□ -0.65
VPS53-207ENST00000570510 EPHA4P54764 986 aa11□□□□□ -0.65
VPS53-207ENST00000570510 STX17P56962 302 aa11□□□□□ -0.65
VPS53-207ENST00000570510 BPIFB4P59827 614 aa11□□□□□ -0.65
VPS53-207ENST00000570510 NRG1Q02297 640 aaPredicted RBP11□□□□□ -0.65
VPS53-207ENST00000570510 RALGDSQ12967 914 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms