RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 GOLM1Q8NBJ4 401 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 TSPAN18Q96SJ8 248 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SEZ6LQ9BYH1 1024 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 NT5MQ9NPB1 228 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SLC38A7Q9NVC3 462 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 MPP6Q9NZW5 540 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 ANAPC2Q9UJX6 822 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 PCNTO95613 3336 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 SMIM35A0A1B0GVV1 85 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 RBM47A0AV96 593 aaKnown RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 TTC24A2A3L6 582 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 H3BMM5 538 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 UBXN8O00124 270 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 BAIAP3O94812 1187 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 LDLRP01130 860 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 C7P10643 843 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 BDNFP23560 247 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 CYP2C18P33260 490 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 RFC2P35250 354 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 GSK3BP49841 420 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 CYBRD1Q53TN4 286 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 GRAMD4Q6IC98 578 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 OR13J1Q8NGT2 312 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 VPS33AQ96AX1 596 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 DCPSQ96C86 337 aaKnown RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 FCRL2Q96LA5 508 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 NSUN5Q96P11 429 aaKnown RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 MTG1Q9BT17 334 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 PIF1Q9H611 641 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 C8orf4Q9NR00 106 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 PAIP2BQ9ULR5 123 aaKnown RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 NEU3Q9UQ49 428 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 PTCH2Q9Y6C5 1203 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 FGF10O15520 208 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 SNAI1O95863 264 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 MYL3P08590 195 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 ZNF182P17025 639 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 CD86P42081 329 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 KCNK10P57789 538 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 LIPEQ05469 1076 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 ATP1A4Q13733 1029 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 OTUD3Q5T2D3 398 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 ASB2Q96Q27 587 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 DOK1Q99704 481 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 ZFYVE28Q9HCC9 887 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 MARCH4Q9P2E8 410 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 COQ6Q9Y2Z9 468 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 UNCXA6NJT0 531 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 MSI1O43347 362 aaKnown RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 S1PR4O95977 384 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 ARSDP51689 593 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 DIO3P55073 304 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 ZIK1Q3SY52 487 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 DUSP28Q4G0W2 176 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 COLGALT2Q8IYK4 626 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 TBC1D21Q8IYX1 336 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 DCP1BQ8IZD4 617 aaKnown RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 SLC16A10Q8TF71 515 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 MYLPFQ96A32 169 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 TMEM125Q96AQ2 219 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 TMEM165Q9HC07 324 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 SDR39U1Q9NRG7 319 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 IFT80Q9P2H3 777 aaPredicted RBP13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 POLG2Q9UHN1 485 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 CDH9Q9ULB4 789 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 PCDHA9Q9Y5H5 950 aa13.94□□□□□ -0.18
VPS9D1-202ENST00000561976 PDCD11Q14690 1871 aaKnown RBP13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 J3QRK9 145 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 TNPO2O14787 897 aaKnown RBP13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 ALBP02768 609 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 FGF4P08620 206 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 IDO1P14902 403 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 PORP16435 677 aaPredicted RBP13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 ZNF12P17014 697 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 CCNA2P20248 432 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 CES1P23141 567 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 CCNYL2Q5T2Q4 361 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 ANKRD26P1Q6NSI1 321 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 BLOC1S3Q6QNY0 202 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 KDELC1Q6UW63 502 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 TMEM86AQ8N2M4 240 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 FBXL8Q96CD0 374 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 PABPC5Q96DU9 382 aaKnown RBP13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 PPP1R10Q96QC0 940 aaKnown RBP13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 TRIM54Q9BYV2 358 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 SLC25A51Q9H1U9 297 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 TUBB1Q9H4B7 451 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 INTS10Q9NVR2 710 aaKnown RBP13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 ZNF236Q9UL36 1845 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 MEIS3P2A8K0S8 358 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 SLC7A4O43246 635 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 MATN4O95460 622 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 FAM163BP0C2L3 166 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 CD1DP15813 335 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 CCR1P32246 355 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 SLC26A3P40879 764 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 CLCNKBP51801 687 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 NFKB2Q00653 900 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 TGFBIQ15582 683 aa13.93□□□□□ -0.18
VPS9D1-202ENST00000561976 FSCN1Q16658 493 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms