RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 WNT3AP56704 352 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 MAXP61244 160 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 CDH17Q12864 832 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 PDIA2Q13087 525 aaKnown RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 GPS2Q13227 327 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 CYTH1Q15438 398 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 TRADDQ15628 312 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 SLC14A2Q15849 920 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 PCSK7Q16549 785 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 BBS9Q3SYG4 887 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 CARD16Q5EG05 197 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 ARMC3Q5W041 872 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 LRRC69Q6ZNQ3 347 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 DSG4Q86SJ6 1040 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 SRLQ86TD4 932 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 SPATS2Q86XZ4 545 aaKnown RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 GOLGA6L1Q8N7Z2 621 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 TSEN2Q8NCE0 465 aaKnown RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 UBLCP1Q8WVY7 318 aaPredicted RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 PKNOX2Q96KN3 472 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 RPL10LQ96L21 214 aaKnown RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 FCRL3Q96P31 734 aaPredicted RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 SRPK1Q96SB4 655 aaKnown RBP11.82□□□□□ -0.52
LDLR-212ENST00000560467 TBL1YQ9BQ87 522 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 MGME1Q9BQP7 344 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 SAYSD1Q9NPB0 183 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 ZDHHC18Q9NUE0 388 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 UBP1Q9NZI7 540 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 MAD1L1Q9Y6D9 718 aa11.82□□□□□ -0.52
LDLR-212ENST00000560467 TMEM131Q92545 1883 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 BHMG1C9JSJ3 638 aaPredicted RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 BNIP3LO60238 219 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 BRINP1O60477 761 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SDC3O75056 442 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SPAG6O75602 509 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SUN1O94901 812 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 GSRP00390 522 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 H2AFXP16104 143 aaPredicted RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 MAT2AP31153 395 aaKnown RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 CD68P34810 354 aaPredicted RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 MAGEA4P43358 317 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 POLR2LP62875 67 aaKnown RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 DSC2Q02487 901 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 CDK18Q07002 472 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 BCL2L1Q07817 233 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 IFFO1Q0D2I5 559 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SFSWAPQ12872 951 aaKnown RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 RTP5Q14D33 572 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 DLG2Q15700 870 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 DENND2CQ68D51 928 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 ZDHHC24Q6UX98 284 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 KANSL1Q7Z3B3 1105 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 CROCCP2Q86T23 111 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 PLPP6Q8IY26 295 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 ZBED8Q8IZ13 594 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SH2D3CQ8N5H7 860 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 OR2AP1Q8NGE2 309 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SPATA22Q8NHS9 363 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SNIP1Q8TAD8 396 aaKnown RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 GABPB2Q8TAK5 448 aaPredicted RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 AENQ8WTP8 325 aaKnown RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 FEM1CQ96JP0 617 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 SERPINB12Q96P63 405 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 TUBGCP5Q96RT8 1024 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 FICDQ9BVA6 458 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 NRSN2Q9GZP1 204 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 NOD2Q9HC29 1040 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 HECAQ9UBI9 543 aaPredicted RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 CA5BQ9Y2D0 317 aa11.81□□□□□ -0.52
LDLR-212ENST00000560467 FCF1Q9Y324 198 aaKnown RBP11.81□□□□□ -0.52
LDLR-212ENST00000560467 GOLGA6L10A6NI86 522 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 RRP8O43159 456 aaKnown RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 LATO43561 262 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ATP9BO43861 1147 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 TTC4O95801 387 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ADH1BP00325 375 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 MT-CO1P00395 513 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 IL1BP01584 269 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 CDK4P11802 303 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 SRCP12931 536 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 TSHRP16473 764 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 HLA-DPA1P20036 260 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 C5AR1P21730 350 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 XPAP23025 273 aaPredicted RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 DRD3P35462 400 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 RXRGP48443 463 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 SESN2P58004 480 aaPredicted RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 RPL26P61254 145 aaKnown RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 CCDC15Q0P6D6 951 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 MYLK3Q32MK0 819 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 POM121L1PQ3SYA9 428 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 CCDC38Q502W7 563 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ARMC12Q5T9G4 340 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ANKRD22Q5VYY1 191 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ALS2CLQ60I27 953 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 C22orf39Q6P5X5 142 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 NLRP9Q7RTR0 991 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 KDELC2Q7Z4H8 507 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 CNPY4Q8N129 248 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms