RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RNF8O76064 485 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 RNF224P0DH78 156 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 NME1P15531 152 aaKnown RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 TCF4P15884 667 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 RHOQP17081 205 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 PCK1P35558 622 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 GJC1P36383 396 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 KCNJ1P48048 391 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 VASPP50552 380 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 POLE2P56282 527 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 CAV1Q03135 178 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 DHX9Q08211 1270 aaKnown RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 NR0B2Q15466 257 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 TAZQ16635 292 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 ODF2Q5BJF6 829 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 TFDP3Q5H9I0 405 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 EFHC2Q5JST6 749 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 TPRG1LQ5T0D9 272 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 PIP5KL1Q5T9C9 394 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 FAM46CQ5VWP2 391 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 RETSATQ6NUM9 610 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 MFSD7Q6UXD7 560 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 DSG4Q86SJ6 1040 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF354CQ86Y25 554 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 SLC35F3Q8IY50 421 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 CHST14Q8NCH0 376 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 BBOF1Q8ND07 529 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 NTAN1Q96AB6 310 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 RNF25Q96BH1 459 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 TBC1D31Q96DN5 1066 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 NCAPGQ9BPX3 1015 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 CCDC3Q9BQI4 270 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 BOCQ9BWV1 1114 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 FRMD8P1Q9BZ68 369 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 FOXP3Q9BZS1 431 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 PREBQ9HCU5 417 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 GPATCH2LQ9NWQ4 482 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 NCKIPSDQ9NZQ3 722 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 FOXJ2Q9P0K8 574 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 PCSK1NQ9UHG2 260 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 RABGEF1Q9UJ41 708 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 FZD10Q9ULW2 581 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 ZFR2Q9UPR6 939 aaKnown RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 HS3ST2Q9Y278 367 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 NEU2Q9Y3R4 380 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 FARP1Q9Y4F1 1045 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-230ENST00000557427 PRAMEF33A0A0G2JMD5 474 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 GOLGA6CA6NDK9 693 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 POM121BA6NF01 834 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 RNF103O00237 685 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 KPNA3O00505 521 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 AQP9O43315 295 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 PRAMEF10O60809 474 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ZMPSTE24O75844 475 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 GOLGA6DP0CG33 693 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 DESP17661 470 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ITIH2P19823 946 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ITIH1P19827 911 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 HNRNPA2B1P22626 353 aaKnown RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 EPHB2P29323 1055 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 CDKN2BP42772 138 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 RECQLP46063 649 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 CD97P48960 835 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 PLTPP55058 493 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 EIF3BP55884 814 aaKnown RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 RIPPLY3P57055 190 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 NRG1Q02297 640 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SLC20A2Q08357 652 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 DMTNQ08495 405 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 CALCOCO2Q13137 446 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SNX1Q13596 522 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SPIDRQ14159 915 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SLMAPQ14BN4 828 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ATP13A4Q4VNC1 1196 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ARSIQ5FYB1 569 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ZFYVE27Q5T4F4 411 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 MANEALQ5VSG8 457 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF783Q6ZMS7 281 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 NLRP14Q86W24 1093 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ARFGAP1Q8N6T3 406 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 DCAF4L2Q8NA75 395 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ZSCAN1Q8NBB4 408 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 OR2A12Q8NGT7 310 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 FBXO25Q8TCJ0 367 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 CCHCR1Q8TD31 782 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SNF8Q96H20 258 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 HEMGNQ9BXL5 484 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SYNDIG1Q9H7V2 258 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF71Q9NQZ8 489 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 TMEM248Q9NWD8 314 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 GOLGA6AQ9NYA3 693 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 PISDQ9UG56 409 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 DRG1Q9Y295 367 aaKnown RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 R3HDM2Q9Y2K5 976 aaKnown RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 FCF1Q9Y324 198 aaKnown RBP12.56□□□□□ -0.4
SHMT2-230ENST00000557427 NFS1Q9Y697 457 aa12.56□□□□□ -0.4
SHMT2-230ENST00000557427 SPTY2D1-AS1A0A0U1RR47 76 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 LRRD1A4D1F6 860 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 C3orf70A6NLC5 250 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms