RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SNAPC3Q92966 411 aa5.06□□□□□ -1.6
PRPF39-209ENST00000556353 TBC1D20Q96BZ9 403 aa5.06□□□□□ -1.6
PRPF39-209ENST00000556353 PKNOX2Q96KN3 472 aa5.06□□□□□ -1.6
PRPF39-209ENST00000556353 TAOK3Q9H2K8 898 aa5.06□□□□□ -1.6
PRPF39-209ENST00000556353 CISD1Q9NZ45 108 aaKnown RBP5.06□□□□□ -1.6
PRPF39-209ENST00000556353 COL18A1P39060 1754 aa5.06□□□□□ -1.6
PRPF39-209ENST00000556353 PEAK1Q9H792 1746 aa5.06□□□□□ -1.6
PRPF39-209ENST00000556353 PARP4Q9UKK3 1724 aaKnown RBP5.06□□□□□ -1.6
PRPF39-209ENST00000556353 HNRNPH1P31943 449 aaKnown RBP5.05□□□□□ -1.6
PRPF39-209ENST00000556353 ZNF132P52740 706 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 EFR3AQ14156 821 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 NEDD9Q14511 834 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 EFNB3Q15768 340 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 ADGRG6Q86SQ4 1221 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 FAM160B2Q86V87 743 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 KCNH5Q8NCM2 988 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 FIG4Q92562 907 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 PRAM1Q96QH2 718 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 TWNKQ96RR1 684 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 SMYD2Q9NRG4 433 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 BABAM1Q9NWV8 329 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 CARD8Q9Y2G2 431 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 NFE2L3Q9Y4A8 694 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 MON2Q7Z3U7 1717 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 LRRC37A3O60309 1634 aa5.05□□□□□ -1.6
PRPF39-209ENST00000556353 SBNO1A3KN83 1393 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 LTN1O94822 1766 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 A0A0G2JPF8 293 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 HNRNPCL3B7ZW38 293 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 HNRNPCL1O60812 293 aaKnown RBP5.04□□□□□ -1.6
PRPF39-209ENST00000556353 NDUFS7O75251 213 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 HNRNPCL4P0DMR1 293 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 SRCP12931 536 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 ITGAXP20702 1163 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 CLDN2P57739 230 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 HILS1P60008 231 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 SLC12A1Q13621 1099 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 MRGPRG-AS1Q2M3A8 158 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 FBXO47Q5MNV8 452 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 FOXL2NBQ6ZUU3 175 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.04□□□□□ -1.6
PRPF39-209ENST00000556353 SPATA5Q8NB90 893 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 LSM14AQ8ND56 463 aaKnown RBP5.04□□□□□ -1.6
PRPF39-209ENST00000556353 TMEM19Q96HH6 336 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 EYA3Q99504 573 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 MXRA8Q9BRK3 442 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 PYM1Q9BRP8 204 aaKnown RBP5.04□□□□□ -1.6
PRPF39-209ENST00000556353 MMP28Q9H239 520 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 ITM2CQ9NQX7 267 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 IL1RAPL1Q9NZN1 696 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 USP54Q70EL1 1684 aa5.04□□□□□ -1.6
PRPF39-209ENST00000556353 SOCS6O14544 535 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 RFPL2O75678 378 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 CRYAAP02489 173 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 KCNA5P22460 613 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 ANOS1P23352 680 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 MCM3P25205 808 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 CHRNDQ07001 517 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 RBBP5Q15291 538 aaKnown RBP5.03□□□□□ -1.6
PRPF39-209ENST00000556353 SYT16Q17RD7 645 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 ACCSLQ4AC99 568 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 SERTAD4-AS1Q5TG53 156 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 PMS2CLQ68D20 193 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 B3GNT6Q6ZMB0 384 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 CCNI2Q6ZMN8 369 aaPredicted RBP5.03□□□□□ -1.6
PRPF39-209ENST00000556353 SCCPDHQ8NBX0 429 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 REEP2Q9BRK0 252 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 NUF2Q9BZD4 464 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 SNTG1Q9NSN8 517 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 PEMTQ9UBM1 199 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 RGPD3A6NKT7 1758 aaPredicted RBP5.03□□□□□ -1.6
PRPF39-209ENST00000556353 RGPD4Q7Z3J3 1758 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 TAF1P21675 1872 aa5.03□□□□□ -1.6
PRPF39-209ENST00000556353 CAMTA1Q9Y6Y1 1673 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 FAM172BPA6NC97 362 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 KLK8O60259 260 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 BRWD1-AS2P59051 145 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 PHEXP78562 749 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 WDR45BQ5MNZ6 344 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 PAPPA-AS1Q5QFB9 102 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 WDR73Q6P4I2 378 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 ZNF449Q6P9G9 518 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 KRBA2Q6ZNG9 492 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 TRMT1LQ7Z2T5 733 aaKnown RBP5.02□□□□□ -1.61
PRPF39-209ENST00000556353 GPAT4Q86UL3 456 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 UNC5CLQ8IV45 518 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 TNIP2Q8NFZ5 429 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 LNX1Q8TBB1 728 aaPredicted RBP5.02□□□□□ -1.61
PRPF39-209ENST00000556353 NOC3LQ8WTT2 800 aaKnown RBP5.02□□□□□ -1.61
PRPF39-209ENST00000556353 RUFY2Q8WXA3 655 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 SIN3AQ96ST3 1273 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 KXD1Q9BQD3 176 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 C17orf75Q9HAS0 396 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 KCNS2Q9ULS6 477 aa5.02□□□□□ -1.61
PRPF39-209ENST00000556353 KAT6BQ8WYB5 2073 aa5.01□□□□□ -1.61
PRPF39-209ENST00000556353 RGPD2P0DJD1 1756 aa5.01□□□□□ -1.61
PRPF39-209ENST00000556353 CASZ1Q86V15 1759 aa5.01□□□□□ -1.61
PRPF39-209ENST00000556353 CGNL1Q0VF96 1302 aa5.01□□□□□ -1.61
PRPF39-209ENST00000556353 SHANK3Q9BYB0 1731 aa5.01□□□□□ -1.61
PRPF39-209ENST00000556353 BLMP54132 1417 aaPredicted RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms