RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 FANCIQ9NVI1 1328 aa4.93□□□□□ -1.62
VPS50-214ENST00000477935 CACNA1FO60840 1977 aa4.93□□□□□ -1.62
VPS50-214ENST00000477935 COL11A1P12107 1806 aaPredicted RBP4.93□□□□□ -1.62
VPS50-214ENST00000477935 NPIPB13A6NJU9 1138 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 NPIPB5A8MRT5 1133 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 C2CD4DB7Z1M9 353 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 NPIPB4C9JG80 1138 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 F5H6K3 240 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 TAF4O00268 1085 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 HNRNPRO43390 633 aaKnown RBP4.92□□□□□ -1.62
VPS50-214ENST00000477935 KCNAB3O43448 404 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 LRP3O75074 770 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 LINC00271P0C7V0 271 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 CHN1P15882 459 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 HOXB9P17482 250 aaPredicted RBP4.92□□□□□ -1.62
VPS50-214ENST00000477935 STAT1P42224 750 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 MTHFRP42898 656 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 PRKAA2P54646 552 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 DYNLL1P63167 89 aaKnown RBP4.92□□□□□ -1.62
VPS50-214ENST00000477935 KLRC3Q07444 240 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 PDCLQ13371 301 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 FHL1Q13642 323 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 PPP2R5BQ15173 497 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 NONOQ15233 471 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS50-214ENST00000477935 DUSP6Q16828 381 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 TIGD6Q17RP2 521 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 ODF3L2Q3SX64 289 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 ALG10Q5BKT4 473 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 ALG10BQ5I7T1 473 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 HMBOX1Q6NT76 420 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 MTFR2Q6P444 385 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 SYNE3Q6ZMZ3 975 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 KDELC2Q7Z4H8 507 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 RPAP2Q8IXW5 612 aaPredicted RBP4.92□□□□□ -1.62
VPS50-214ENST00000477935 OR6Y1Q8NGX8 325 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 SCFD2Q8WU76 684 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 TMEM174Q8WUU8 243 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 ARRDC3Q96B67 414 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 RAVER2Q9HCJ3 691 aaKnown RBP4.92□□□□□ -1.62
VPS50-214ENST00000477935 ZNF304Q9HCX3 659 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 SLC22A11Q9NSA0 550 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 TMLHEQ9NVH6 421 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 MCM9Q9NXL9 1143 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 SLC25A13Q9UJS0 675 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 GMEB2Q9UKD1 530 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 COMMD10Q9Y6G5 202 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 ADGRA3Q8IWK6 1321 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 SPEGQ15772 3267 aa4.92□□□□□ -1.62
VPS50-214ENST00000477935 SIPA1L1O43166 1804 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 TCRBV7S3A2A0A539 114 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 INSIG1O15503 277 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 LCKP06239 509 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 MMP3P08254 477 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 PKMP14618 531 aaKnown RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 AKR1B1P15121 316 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 TBXAS1P24557 533 aaPredicted RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 DNAJB1P25685 340 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 THPOP40225 353 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 TRAPPC10P48553 1259 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 POLD2P49005 469 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 TFCP2Q12800 502 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 MAPK7Q13164 816 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 KCNC3Q14003 757 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 PTGR1Q14914 329 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 ENTPD8Q5MY95 495 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 DAB2IPQ5VWQ8 1189 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 FAM43BQ6ZT52 329 aaPredicted RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 SYT13Q7L8C5 426 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 ADGRD2Q7Z7M1 963 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 GPSM1Q86YR5 675 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 PELI3Q8N2H9 469 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 MYCT1Q8N699 235 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 MIGA1Q8NAN2 632 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 TDRD5Q8NAT2 981 aaKnown RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 AFG1LQ8WV93 481 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 KCNJ9Q92806 393 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 ZNF689Q96CS4 500 aaPredicted RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 ZNF419Q96HQ0 510 aaPredicted RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 CRNKL1Q9BZJ0 848 aaKnown RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 TRIM31Q9BZY9 425 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 CLPBQ9H078 707 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 TASP1Q9H6P5 420 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 MAP6D1Q9H9H5 199 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 SMC4Q9NTJ3 1288 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 CYP39A1Q9NYL5 469 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 DUSP12Q9UNI6 340 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 USP9XQ93008 2570 aaPredicted RBP4.91□□□□□ -1.62
VPS50-214ENST00000477935 SCN10AQ9Y5Y9 1956 aa4.91□□□□□ -1.62
VPS50-214ENST00000477935 MYO10Q9HD67 2058 aa4.9□□□□□ -1.62
VPS50-214ENST00000477935 FRYQ5TBA9 3013 aa4.9□□□□□ -1.62
VPS50-214ENST00000477935 hCG_1642624A0A1W2PR95 340 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 E7EVH7 732 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 PER2O15055 1255 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 MDM4O15151 490 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 UBTFL1P0CB47 393 aaPredicted RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 LYL1P12980 280 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 HOXB2P14652 356 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 ALKBH1Q13686 389 aaKnown RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 SEMA3AQ14563 771 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 SMAD1Q15797 465 aaKnown RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms