RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 H3BMM5 538 aa15.03■□□□□ -0
LDLR-202ENST00000455727 TRIM38O00635 465 aa15.03■□□□□ -0
LDLR-202ENST00000455727 ACOT8O14734 319 aa15.03■□□□□ -0
LDLR-202ENST00000455727 NDUFS3O75489 264 aa15.03■□□□□ -0
LDLR-202ENST00000455727 RHOBTB1O94844 696 aa15.03■□□□□ -0
LDLR-202ENST00000455727 CDK14O94921 469 aa15.03■□□□□ -0
LDLR-202ENST00000455727 SNRPB2P08579 225 aaKnown RBP15.03■□□□□ -0
LDLR-202ENST00000455727 PKNOX1P55347 436 aa15.03■□□□□ -0
LDLR-202ENST00000455727 PPP1R3AQ16821 1122 aa15.03■□□□□ -0
LDLR-202ENST00000455727 SETMARQ53H47 684 aaPredicted RBP15.03■□□□□ -0
LDLR-202ENST00000455727 LPCAT4Q643R3 524 aa15.03■□□□□ -0
LDLR-202ENST00000455727 RYBPQ8N488 228 aaPredicted RBP15.03■□□□□ -0
LDLR-202ENST00000455727 IGSF21Q96ID5 467 aa15.03■□□□□ -0
LDLR-202ENST00000455727 SLC25A23Q9BV35 468 aa15.03■□□□□ -0
LDLR-202ENST00000455727 UNC93B1Q9H1C4 597 aa15.03■□□□□ -0
LDLR-202ENST00000455727 GKN1Q9NS71 199 aa15.03■□□□□ -0
LDLR-202ENST00000455727 SPATS2LQ9NUQ6 558 aaKnown RBP15.03■□□□□ -0
LDLR-202ENST00000455727 CACNA2D2Q9NY47 1150 aa15.03■□□□□ -0
LDLR-202ENST00000455727 DLGAP2Q9P1A6 1054 aa15.03■□□□□ -0
LDLR-202ENST00000455727 PCDHGA7Q9Y5G6 932 aa15.03■□□□□ -0
LDLR-202ENST00000455727 RAI2Q9Y5P3 530 aa15.03■□□□□ -0
LDLR-202ENST00000455727 ANKRD66B4E2M5 251 aa15.02■□□□□ -0
LDLR-202ENST00000455727 CBX4O00257 560 aa15.02■□□□□ -0
LDLR-202ENST00000455727 PFDN6O15212 129 aa15.02■□□□□ -0
LDLR-202ENST00000455727 LINGO3P0C6S8 592 aa15.02■□□□□ -0
LDLR-202ENST00000455727 PEX2P28328 305 aa15.02■□□□□ -0
LDLR-202ENST00000455727 SGSHP51688 502 aa15.02■□□□□ -0
LDLR-202ENST00000455727 PSME3P61289 254 aa15.02■□□□□ -0
LDLR-202ENST00000455727 MS4A2Q01362 244 aa15.02■□□□□ -0
LDLR-202ENST00000455727 RAD51Q06609 339 aa15.02■□□□□ -0
LDLR-202ENST00000455727 TRIP10Q15642 601 aa15.02■□□□□ -0
LDLR-202ENST00000455727 AGKQ53H12 422 aa15.02■□□□□ -0
LDLR-202ENST00000455727 SFT2D3Q587I9 215 aa15.02■□□□□ -0
LDLR-202ENST00000455727 CLEC6AQ6EIG7 209 aa15.02■□□□□ -0
LDLR-202ENST00000455727 CXorf57Q6NSI4 855 aaKnown RBP15.02■□□□□ -0
LDLR-202ENST00000455727 KIAA1841Q6NSI8 718 aa15.02■□□□□ -0
LDLR-202ENST00000455727 HACD2Q6Y1H2 254 aa15.02■□□□□ -0
LDLR-202ENST00000455727 BTBD9Q96Q07 612 aa15.02■□□□□ -0
LDLR-202ENST00000455727 RNF38Q9H0F5 515 aa15.02■□□□□ -0
LDLR-202ENST00000455727 PACSIN3Q9UKS6 424 aa15.02■□□□□ -0
LDLR-202ENST00000455727 OAS3Q9Y6K5 1087 aaKnown RBP15.02■□□□□ -0
LDLR-202ENST00000455727 UBA6A0AVT1 1052 aaPredicted RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 UBXN8O00124 270 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 SRP72O76094 671 aaKnown RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 LATS1O95835 1130 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 PYGLP06737 847 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 UQCRBP14927 111 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 FMO4P31512 558 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 TTPAP49638 278 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 IRX1P78414 480 aaPredicted RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 ARHGEF6Q15052 776 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 PFKFB4Q16877 469 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 MMEL1Q495T6 779 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 RNF219Q5W0B1 726 aaPredicted RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 OR52E8Q6IFG1 317 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 PAQR3Q6TCH7 311 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 HERC6Q8IVU3 1022 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 NKAPQ8N5F7 415 aaKnown RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 USP13Q92995 863 aaPredicted RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 TOP1MTQ969P6 601 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 TMA16Q96EY4 203 aaKnown RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 EXOC2Q96KP1 924 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 EBF3Q9H4W6 596 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 SUCOQ9UBS9 1254 aaKnown RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 DNAJC15Q9Y5T4 150 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 H7C0S8 307 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 FBP2O00757 339 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 AZIN1O14977 448 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 PRSS56P0CW18 603 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 PAX7P23759 505 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 ALDH1A3P47895 512 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 CLCN4P51793 760 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 CDH13P55290 713 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 ARF5P84085 180 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 INO80DQ53TQ3 878 aaPredicted RBP15.01□□□□□ -0.01
LDLR-202ENST00000455727 KANK2Q63ZY3 851 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 REP15Q6BDI9 236 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 ASB9Q96DX5 294 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 SCLYQ96I15 445 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 BIRC8Q96P09 236 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 MUC3BQ9H195 1237 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 CCDC167Q9P0B6 97 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 PDP2Q9P2J9 529 aa15.01□□□□□ -0.01
LDLR-202ENST00000455727 SYCE1LA8MT33 242 aa15□□□□□ -0.01
LDLR-202ENST00000455727 STX16-NPEPL1H3BU86 382 aa15□□□□□ -0.01
LDLR-202ENST00000455727 SIX3O95343 332 aaPredicted RBP15□□□□□ -0.01
LDLR-202ENST00000455727 CD160O95971 181 aa15□□□□□ -0.01
LDLR-202ENST00000455727 LYNP07948 512 aa15□□□□□ -0.01
LDLR-202ENST00000455727 PIM1P11309 404 aaPredicted RBP15□□□□□ -0.01
LDLR-202ENST00000455727 GFAPP14136 432 aa15□□□□□ -0.01
LDLR-202ENST00000455727 TSPAN8P19075 237 aa15□□□□□ -0.01
LDLR-202ENST00000455727 LRRC36Q1X8D7 754 aa15□□□□□ -0.01
LDLR-202ENST00000455727 NCEH1Q6PIU2 408 aa15□□□□□ -0.01
LDLR-202ENST00000455727 LPCAT1Q8NF37 534 aa15□□□□□ -0.01
LDLR-202ENST00000455727 BHLHE22Q8NFJ8 381 aaPredicted RBP15□□□□□ -0.01
LDLR-202ENST00000455727 EXT2Q93063 718 aa15□□□□□ -0.01
LDLR-202ENST00000455727 C1QTNF3Q9BXJ4 246 aa15□□□□□ -0.01
LDLR-202ENST00000455727 AKTIPQ9H8T0 292 aa15□□□□□ -0.01
LDLR-202ENST00000455727 MID1IP1Q9NPA3 183 aa15□□□□□ -0.01
LDLR-202ENST00000455727 EPS15L1Q9UBC2 864 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms