RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 CMTM5Q96DZ9 223 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 MFSD3Q96ES6 412 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 FCRL3Q96P31 734 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 PANX3Q96QZ0 392 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 RANBP9Q96S59 729 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 CPNE1Q99829 537 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 KXD1Q9BQD3 176 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 ADGRE3Q9BY15 652 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 YIPF3Q9GZM5 350 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 IL1RAPL1Q9NZN1 696 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 EMCNQ9ULC0 261 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 CCDC78A2IDD5 438 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 ITM2AO43736 263 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 IGSF6O95976 241 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 ATXN1LP0C7T5 689 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 RALBP11234 206 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 LAMP2P13473 410 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 SP100P23497 879 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 MTHFRP42898 656 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 COPAP53621 1224 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 AP1S1P61966 158 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 ECT2LQ008S8 904 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 PDGFRLQ15198 375 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 NCEH1Q6PIU2 408 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 YAF2Q8IY57 180 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 SMRP1Q8NCR6 262 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 FBXO27Q8NI29 283 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 VOPP1Q96AW1 172 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 RMDN1Q96DB5 314 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 TM6SF2Q9BZW4 377 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 C20orf96Q9NUD7 363 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 FBXO10Q9UK96 956 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 RAI2Q9Y5P3 530 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 KIAA1549LQ6ZVL6 1849 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 A0A1W2PPC1 479 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 HOXC11O43248 304 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PROCP04070 461 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 NMBRP28336 390 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SPRP35270 261 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 NNMTP40261 264 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 ABCE1P61221 599 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SNRPD1P62314 119 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 TUBB3Q13509 450 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 GALNT3Q14435 633 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PCLAFQ15004 111 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 DGKKQ5KSL6 1271 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PDPK2PQ6A1A2 396 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 KIAA0907Q7Z7F0 614 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PAF1Q8N7H5 531 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 OR6K2Q8NGY2 324 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 GABPB2Q8TAK5 448 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SORCS1Q8WY21 1168 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SMIM14Q96QK8 99 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 TRIB3Q96RU7 358 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 TSC22D3Q99576 134 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 TDRD1Q9BXT4 1180 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 VCX3BQ9H321 246 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SLC24A3Q9HC58 644 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SPATS2LQ9NUQ6 558 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SLC17A6Q9P2U8 582 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 COPG2Q9UBF2 871 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 HS3ST2Q9Y278 367 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 WASF2Q9Y6W5 498 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 TMEM265A0A087WTH1 108 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 ZCWPW2A0A1B0GU75 182 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 H3BQ06 376 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SMIM24O75264 130 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 LYPLA1O75608 230 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 BAG2O95816 211 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PRLP01236 227 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PRKCGP05129 697 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 CISD3P0C7P0 127 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 ERVK-10P10266 1014 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SRCP12931 536 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 CPA3P15088 417 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 ALOX15P16050 662 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SLC6A11P48066 632 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 CSNK1DP48730 415 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 DGKGP49619 791 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 CCNHP51946 323 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 FCHO2Q0JRZ9 810 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 KCNMB4Q86W47 210 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SFTPA1Q8IWL2 248 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 ETFBKMTQ8IXQ9 262 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 RYBPQ8N488 228 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PDCD6IPQ8WUM4 868 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 ISG20Q96AZ6 181 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 TNKS2Q9H2K2 1166 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PDP2Q9P2J9 529 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SLCO3A1Q9UIG8 710 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 SLC8A2Q9UPR5 921 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 PCDHGC4Q9Y5F7 938 aa13.15□□□□□ -0.3
SQSTM1-201ENST00000360718 A0A088AWK7 358 aa13.14□□□□□ -0.31
SQSTM1-201ENST00000360718 AHCYL1O43865 530 aa13.14□□□□□ -0.31
SQSTM1-201ENST00000360718 SIN3BO75182 1162 aa13.14□□□□□ -0.31
SQSTM1-201ENST00000360718 TOP3BO95985 862 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-201ENST00000360718 MPOP05164 745 aa13.14□□□□□ -0.31
SQSTM1-201ENST00000360718 PRDX6P30041 224 aa13.14□□□□□ -0.31
SQSTM1-201ENST00000360718 GKP32189 559 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms