RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ATG16L1Q676U5 607 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 CAPN13Q6MZZ7 669 aaPredicted RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 LINGO4Q6UY18 593 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 SMYD4Q8IYR2 804 aaPredicted RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF579Q8NAF0 562 aaKnown RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 FEZF2Q8TBJ5 459 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 KCTD4Q8WVF5 259 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 CRISPLD2Q9H0B8 497 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 OR2AG1Q9H205 316 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 KCNF1Q9H3M0 494 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 SUV39H2Q9H5I1 410 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 OCEL1Q9H607 264 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF334Q9HCZ1 680 aaPredicted RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 FLRT1Q9NZU1 646 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 KIAA1468Q9P260 1216 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 UPB1Q9UBR1 384 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 PLCL2Q9UPR0 1127 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 UPK3BL1B0FP48 263 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 UPK3BL2E5RIL1 263 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 H0YC42 278 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 TLR4O00206 839 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 DDX3XO00571 662 aaKnown RBP eCLIP8.39□□□□□ -1.073e-10■■■□□ 17.2
HMGB1-203ENST00000341423 CKMT2P17540 419 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 LPOP22079 712 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 MSX1P28360 303 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PTPN7P35236 360 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 HSD17B2P37059 387 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 GALK2Q01415 458 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 VPS26BQ4G0F5 336 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 KLHL26Q53HC5 615 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ERMARDQ5T6L9 678 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 NCEH1Q6PIU2 408 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF720Q7Z2F6 126 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 UBR1Q8IWV7 1749 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF398Q8TD17 642 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PSMG2Q969U7 264 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 UTP23Q9BRU9 249 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 CCM2Q9BSQ5 444 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 OSBPL10Q9BXB5 764 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 AP1M1Q9BXS5 423 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 NHEJ1Q9H9Q4 299 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 TAS2R13Q9NYV9 303 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 NSG1A0A0A6YYJ2 146 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ERAL1O75616 437 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 RBP3P10745 1247 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 NSG1P42857 185 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 RXRGP48443 463 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 SLC7A2P52569 658 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 UBE2NP61088 152 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ABCE1P61221 599 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 KHDC1LQ5JSQ8 128 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 WLSQ5T9L3 541 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 RNF19BQ6ZMZ0 732 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 CCNJLQ8IV13 435 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF669Q96BR6 464 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 C8orf48Q96LL4 319 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PTCHD1Q96NR3 888 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PRDM8Q9NQV8 689 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 AP1M2Q9Y6Q5 423 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 A8MUA0 341 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 F8VZ95 297 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 AGPSO00116 658 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 NFKB1P19838 968 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PRKG2Q13237 762 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 GRM7Q14831 915 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PARM1Q6UWI2 310 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 C6orf15Q6UXA7 325 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 HSDL2Q6YN16 418 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 NAXDQ8IW45 347 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 RBM12BQ8IXT5 1001 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ARHGAP24Q8N264 748 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 CXorf38Q8TB03 319 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ASB15Q8WXK1 588 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 MYCBPQ99417 103 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 TBL1XR1Q9BZK7 514 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 A0A0A6YYK5 440 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ISPDA4D126 451 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PLD2O14939 933 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF185O15231 689 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 SPAM1P38567 509 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 PTDSS1P48651 473 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 OR4D2P58180 307 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF268Q14587 947 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 SMAD1Q15797 465 aaKnown RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 FAM83EQ2M2I3 478 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 AMIGO3Q86WK7 504 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 MEIOBQ8N635 442 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 SLC30A5Q8TAD4 765 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 COG1Q8WTW3 980 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 UBE2Q2Q8WVN8 375 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 EMID1Q96A84 441 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-203ENST00000341423 GRAMD1AQ96CP6 724 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 ATXN7L3BQ96GX2 97 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 CYP2S1Q96SQ9 504 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 SMYD3Q9H7B4 428 aa8.39□□□□□ -1.07
HMGB1-203ENST00000341423 RGPD1P0DJD0 1748 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 MEFVO15553 781 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 RHOQP17081 205 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 SLC16A1P53985 500 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 TRIP13Q15645 432 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms