RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 WDR60Q8WVS4 1066 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 SLC44A1Q8WWI5 657 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 HOPXQ9BPY8 73 aaPredicted RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 TM6SF2Q9BZW4 377 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 PCBD2Q9H0N5 130 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 RHOJQ9H4E5 214 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 BTRCQ9Y297 605 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 LYVE1Q9Y5Y7 322 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 OR52K2Q8NGK3 314 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 FCRL2Q96LA5 508 aaPredicted RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 VWA7Q9Y334 891 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 ACADLP28330 430 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 DCTN2Q13561 401 aaKnown RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 PRAMEF19Q5SWL8 479 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 ARHGAP22Q7Z5H3 698 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 LINGO1Q96FE5 620 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 TMPRSS4Q9NRS4 437 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 ARL8BQ9NVJ2 186 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 SAMD4AQ9UPU9 718 aaKnown RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 PCDHA2Q9Y5H9 948 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 SHPRHQ149N8 1683 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 PIRTP0C851 137 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 CACNG1Q06432 222 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 DGCR6Q14129 220 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 ABRAXAS1Q6UWZ7 409 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 SAMD14Q8IZD0 417 aaPredicted RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 FEM1CQ96JP0 617 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 B3GNT5Q9BYG0 378 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 CFAP97Q9P2B7 532 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 SPAM1P38567 509 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 WNT3AP56704 352 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 JAM2P57087 298 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 RPP38P78345 283 aaKnown RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 BEND5Q7L4P6 421 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 LRP10Q7Z4F1 713 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 CDYL2Q8N8U2 506 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 CDH19Q9H159 772 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 COMMD9Q9P000 198 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 AP1S1P61966 158 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 TARBP2Q15633 366 aaKnown RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 FAAH2Q6GMR7 532 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 DNAJC11Q9NVH1 559 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 HEBP2Q9Y5Z4 205 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 PRMT5O14744 637 aaPredicted RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 DNAJA2O60884 412 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 NTRK1P04629 796 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 ICAM3P32942 547 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 ADARP55265 1226 aaKnown RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 ZIK1Q3SY52 487 aaPredicted RBP19.1■□□□□ 0.65
UPF1-201ENST00000262803 SCIMPQ6UWF3 145 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 OR10H5Q8NGA6 315 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 LPPQ93052 612 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 CAB39LQ9H9S4 337 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 NUDT4Q9NZJ9 180 aa19.1■□□□□ 0.65
UPF1-201ENST00000262803 FFAR3O14843 346 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 GPR42O15529 346 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 CDH4P55283 916 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 GALNT3Q14435 633 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 CRY2Q49AN0 593 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 AAGABQ6PD74 315 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 UBE2R2Q712K3 238 aaPredicted RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 MON1BQ7L1V2 547 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 HIST2H2ABQ8IUE6 130 aaPredicted RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 BTBD9Q96Q07 612 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 NIFKQ9BYG3 293 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 GPR88Q9GZN0 384 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.09■□□□□ 0.65
UPF1-201ENST00000262803 GLYATL1P3A0A0U1RQE8 302 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 SUV39H1O43463 412 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 SLC6A2P23975 617 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 OR1D2P34982 312 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 SLC1A5Q15758 541 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 CLNKQ7Z7G1 428 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 WFIKKN2Q8TEU8 576 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 METTL21AQ8WXB1 218 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 NKD2Q969F2 451 aaPredicted RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 CRELD1Q96HD1 420 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 PANX1Q96RD7 426 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 REXO4Q9GZR2 422 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 PLLPQ9Y342 182 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 H3BM21 787 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 LRCH4O75427 683 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 PAGE1O75459 146 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 IPO13O94829 963 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 C4BPAP04003 597 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 CACUL1Q86Y37 369 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 HDAC10Q969S8 669 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 GPR20Q99678 358 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 CALML5Q9NZT1 146 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 BCL9LQ86UU0 1499 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3DA0A087WVF3 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3IA0A087WXS9 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3EA0A087X179 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3KA0A087X1G2 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3FA6NER0 549 aaPredicted RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3LB9A6J9 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 RFXANKO14593 260 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 MTRF1O75570 445 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3HP0C7X1 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 ALPPL2P10696 532 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms