RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 BAG3O95817 575 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 CTCFP49711 727 aaPredicted RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 ICA1Q05084 483 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 CHAF1AQ13111 956 aaPredicted RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 CRY2Q49AN0 593 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 ATG9BQ674R7 924 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 SPSB3Q6PJ21 355 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 SYNE3Q6ZMZ3 975 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 RASGRP2Q7LDG7 609 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 BRSK2Q8IWQ3 736 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 FAM184AQ8NB25 1140 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 WFIKKN2Q8TEU8 576 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 TBC1D22AQ8WUA7 517 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 FAM216AQ8WUB2 273 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 MASTLQ96GX5 879 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 TTC14Q96N46 770 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 TEFMQ96QE5 360 aaKnown RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 SEC62Q99442 399 aaKnown RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 CRB3Q9BUF7 120 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 IFT27Q9BW83 186 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 CRNKL1Q9BZJ0 848 aaKnown RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 KRT23Q9C075 422 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 ACAD9Q9H845 621 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 TXLNGQ9NUQ3 528 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 THAP1Q9NVV9 213 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 NAP1L2Q9ULW6 460 aaPredicted RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 SALL1Q9NSC2 1324 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 LAMB1P07942 1786 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 TARSL2A2RTX5 802 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 SMTNL1A8MU46 457 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 E7EWF7 191 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 H0Y3Z8 333 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 H0YIN7 160 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 PCP11498 1178 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 DDIT3P35638 169 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 DPP6P42658 865 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 NT5C2P49902 561 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 ERVFC1-1P60608 527 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 HMGN5P82970 282 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 BNC1Q01954 994 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 FOXO1Q12778 655 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 COASYQ13057 564 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 PDCLQ13371 301 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 PLCB4Q15147 1175 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 ALX1Q15699 326 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 ADCK5Q3MIX3 580 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 SYCP2LQ5T4T6 812 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 CPLX2Q6PUV4 134 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 MFSD6Q6ZSS7 791 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 C15orf52Q6ZUT6 534 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 USP43Q70EL4 1123 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 MON1BQ7L1V2 547 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 CCDC83Q8IWF9 413 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 RBFAQ8N0V3 343 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 SCAIQ8N9R8 606 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 HERC2P3Q9BVR0 1158 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 DDX31Q9H8H2 851 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 PLEKHA2Q9HB19 425 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 SRPRBQ9Y5M8 271 aaKnown RBP5.22□□□□□ -1.57
VPS29-212ENST00000621131 CACNA1SQ13698 1873 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 ANKRD31Q8N7Z5 1873 aa5.22□□□□□ -1.57
VPS29-212ENST00000621131 IGLV5-52A0A0A0MRZ9 124 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 IGHV4-28A0A0C4DH34 117 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 E7EVH7 732 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 CPLX1O14810 134 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 CCNT1O60563 726 aaKnown RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 CSTBP04080 98 aaKnown RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 GJB2P29033 226 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 RFC1P35251 1148 aaPredicted RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 CLCN5P51795 746 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 MVDP53602 400 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 GRSF1Q12849 480 aaKnown RBP eCLIP5.21□□□□□ -1.58
VPS29-212ENST00000621131 MYBPC2Q14324 1141 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 SMAD1Q15797 465 aaKnown RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 CREB3L2Q70SY1 520 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 SYT13Q7L8C5 426 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 FJX1Q86VR8 437 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 C2CD5Q86YS7 1000 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 CACNA2D3Q8IZS8 1091 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 FSIP1Q8NA03 581 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 TMED6Q8WW62 240 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 ZNF622Q969S3 477 aaKnown RBP eCLIP5.21□□□□□ -1.58
VPS29-212ENST00000621131 SYAP1Q96A49 352 aaPredicted RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 RTP4Q96DX8 246 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 ZNF274Q96GC6 653 aaPredicted RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 LLPHQ9BRT6 129 aaKnown RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 C1QTNF4Q9BXJ3 329 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 COA1Q9GZY4 146 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 ATP8A2Q9NTI2 1148 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 ATP6V0A2Q9Y487 856 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 RANBP2P49792 3224 aaKnown RBP5.21□□□□□ -1.58
VPS29-212ENST00000621131 COL4A1P02462 1669 aa5.21□□□□□ -1.58
VPS29-212ENST00000621131 KIF13BQ9NQT8 1826 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 NAV1Q8NEY1 1877 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 MYO5AQ9Y4I1 1855 aaKnown RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 DLEC1Q9Y238 1755 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 A0A087WYN8 130 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 VPS37CA5D8V6 355 aaPredicted RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 CCDC69A6NI79 296 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 H3BQV1 296 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms