RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 ECHDC3Q96DC8 303 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 ZNF419Q96HQ0 510 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 LOXL4Q96JB6 756 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 FEM1CQ96JP0 617 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 SIGLEC10Q96LC7 697 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 SRPK1Q96SB4 655 aaKnown RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 PHOX2BQ99453 314 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 EBNA1BP2Q99848 306 aaKnown RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 GORASP1Q9BQQ3 440 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 TDRD1Q9BXT4 1180 aaKnown RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 DUSP15Q9H1R2 295 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 CNOT10Q9H9A5 744 aaKnown RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 LRRC40Q9H9A6 602 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 PSMC3IPQ9P2W1 217 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 SERGEFQ9UGK8 458 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 SUSD2Q9UGT4 822 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 RABGEF1Q9UJ41 708 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 GMEB2Q9UKD1 530 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 PCDHGC4Q9Y5F7 938 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 VPS13AQ96RL7 3174 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 WDR87Q6ZQQ6 2873 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 TTC24A2A3L6 582 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 PRR23AA6NEV1 266 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 TRAFD1O14545 582 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 SHOX2O60902 331 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 AVILO75366 819 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 FSBPO95073 299 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 BCKDHBP21953 392 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 GCAP28676 217 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 SSTR1P30872 391 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 HPDP32754 393 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 GRIA4P48058 902 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 CCR5P51681 352 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 METAP1P53582 386 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 RPS21P63220 83 aaKnown RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 NIPAL4Q0D2K0 466 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 TRAF2Q12933 501 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 SRSF5Q13243 272 aaKnown RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 ARHGEF7Q14155 803 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 PCSK7Q16549 785 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 SETMARQ53H47 684 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 FAM182AQ5T1J6 154 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 STEAP4Q687X5 459 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 KIAA0895LQ68EN5 471 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 LAIR1Q6GTX8 287 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 C3orf62Q6ZUJ4 267 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 CYP2U1Q7Z449 544 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 PRPF39Q86UA1 669 aaKnown RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 TRIM69Q86WT6 500 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 TMEFF1Q8IYR6 380 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 RGL4Q8IZJ4 473 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 FBF1Q8TES7 1133 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 SNX19Q92543 992 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 RMDN1Q96DB5 314 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 CFAP36Q96G28 342 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 HSPA12BQ96MM6 686 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 CYTH2Q99418 400 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 NAT9Q9BTE0 207 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 DHRS4Q9BTZ2 278 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 MLPHQ9BV36 600 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 C1QTNF7Q9BXJ2 289 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 CD93Q9NPY3 652 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 CASS4Q9NQ75 786 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 ZC3H7BQ9UGR2 993 aaKnown RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 MBD1Q9UIS9 605 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 SMG5Q9UPR3 1016 aaKnown RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 FADS3Q9Y5Q0 445 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 ACTL7BQ9Y614 415 aa10.1□□□□□ -0.79
UPF1-213ENST00000601981 TP53BP1Q12888 1972 aaPredicted RBP10.1□□□□□ -0.79
UPF1-213ENST00000601981 PLXNA2O75051 1894 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 TCRBV9S1A1TA0A576 114 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 SDR42E2A6NKP2 422 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 METTL12A8MUP2 240 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 F5H423 210 aaPredicted RBP10.09□□□□□ -0.79
UPF1-213ENST00000601981 PLK4O00444 970 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 RNGTTO60942 597 aaKnown RBP10.09□□□□□ -0.79
UPF1-213ENST00000601981 PMPCBO75439 489 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 GJB3O75712 270 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 NDST3O95803 873 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 MT-CYBP00156 380 aaPredicted RBP10.09□□□□□ -0.79
UPF1-213ENST00000601981 EPOP01588 193 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 LMNAP02545 664 aaKnown RBP10.09□□□□□ -0.79
UPF1-213ENST00000601981 MMP2P08253 660 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 ELFN1P0C7U0 828 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 GNSP15586 552 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 TIMP2P16035 220 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 HLA-DPA1P20036 260 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 HOXD12P35452 270 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 GRIA1P42261 906 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 ABL2P42684 1182 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 CDK18Q07002 472 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 SGCGQ13326 291 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 NAPEPLDQ6IQ20 393 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 CAPN12Q6ZSI9 719 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 CYS1Q717R9 158 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 DPPA4Q7L190 304 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 LINC00523Q86TU6 105 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 HORMAD1Q86X24 394 aa10.09□□□□□ -0.79
UPF1-213ENST00000601981 FRMD1Q8N878 549 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms