RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 PPP4R4Q6NUP7 873 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 CANT1Q8WVQ1 401 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 RGS18Q9NS28 235 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 DSEQ9UL01 958 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 SLC8A2Q9UPR5 921 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 TANC1Q9C0D5 1861 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 NR5A2O00482 541 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 GJB3O75712 270 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 SIX3O95343 332 aaPredicted RBP16.5■□□□□ 0.23
LIG1-206ENST00000594067 ATP6V1B2P21281 511 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 ETFBP38117 255 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 SH3BP2P78314 561 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 MAP7D1Q3KQU3 841 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 ALFQ53S48 1182 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 SIRPB2Q5JXA9 342 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 C8orf82Q6P1X6 216 aaPredicted RBP16.5■□□□□ 0.23
LIG1-206ENST00000594067 THEM5Q8N1Q8 247 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 FAM47BQ8NA70 645 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 TRPC4APQ8TEL6 797 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 SNRNP27Q8WVK2 155 aaKnown RBP16.5■□□□□ 0.23
LIG1-206ENST00000594067 TFAP2CQ92754 450 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 PSMG2Q969U7 264 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 TBATAQ96M53 351 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 MFSD1Q9H3U5 465 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 SP110Q9HB58 689 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 UXTQ9UBK9 157 aaPredicted RBP16.5■□□□□ 0.23
LIG1-206ENST00000594067 TTC3P53804 2025 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 SOCS2O14508 198 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 SLC7A4O43246 635 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 WISP3O95389 354 aaPredicted RBP16.49■□□□□ 0.23
LIG1-206ENST00000594067 HNRNPCP07910 306 aaKnown RBP eCLIP16.49■□□□□ 0.23
LIG1-206ENST00000594067 GPX3P22352 226 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 ENTPD1P49961 510 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 CTBSQ01459 385 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 PRKCQQ04759 706 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 GEN1Q17RS7 908 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 UGT3A2Q3SY77 523 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 ZNF554Q86TJ5 538 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 LRRC49Q8IUZ0 686 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 LRRC43Q8N309 656 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 PTGR2Q8N8N7 351 aaPredicted RBP16.49■□□□□ 0.23
LIG1-206ENST00000594067 L3HYPDHQ96EM0 354 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 TRMOQ9BU70 441 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 A0A0J9YYE9 177 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 M0QZQ0 153 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 AKAP10O43572 662 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 PAPSS2O95340 614 aaPredicted RBP16.49■□□□□ 0.23
LIG1-206ENST00000594067 CD52P31358 61 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 CXCL17Q6UXB2 119 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 CROCCP3Q8IVE0 287 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 CLYBLQ8N0X4 340 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 SERPINB11Q96P15 392 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 EFHD1Q9BUP0 239 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 EBF1Q9UH73 591 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 ZNHIT2Q9UHR6 403 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 FAF1Q9UNN5 650 aaPredicted RBP16.49■□□□□ 0.23
LIG1-206ENST00000594067 DNAJC15Q9Y5T4 150 aa16.49■□□□□ 0.23
LIG1-206ENST00000594067 MROH6A6NGR9 719 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 TRIM64CA6NLI5 447 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 STAMBPO95630 424 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 FOXA1P55317 472 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 HERVK_113P63132 956 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 MAPRE1Q15691 268 aaKnown RBP16.48■□□□□ 0.23
LIG1-206ENST00000594067 VPS26BQ4G0F5 336 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 ZNF549Q6P9A3 640 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 ELMSAN1Q6PJG2 1045 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 HACD2Q6Y1H2 254 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 MRPL10Q7Z7H8 261 aaKnown RBP16.48■□□□□ 0.23
LIG1-206ENST00000594067 ANKFN1Q8N957 763 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 KCNA7Q96RP8 456 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 ERVK-6Q9BXR3 956 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 OSBPL6Q9BZF3 934 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 PLGRKTQ9HBL7 147 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 MID1IP1Q9NPA3 183 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 VPS45Q9NRW7 570 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 MAP10Q9P2G4 905 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 SH3PXD2BA1X283 911 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 SAC3D1A6NKF1 404 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 WASH4PA8MWX3 477 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 UBXN8O00124 270 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 BMP2P12643 396 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 CD1DP15813 335 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 GPR15P49685 360 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 ACADVLP49748 655 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 NUP107P57740 925 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 GRB7Q14451 532 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 SLC39A12Q504Y0 691 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 Q6ZNX1 250 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 UMODL1-AS1Q8N2C9 162 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 PGBD5Q8N414 524 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 OR2T34Q8NGX1 318 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 OR2T3Q8NH03 318 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 SLC45A3Q96JT2 553 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 NSUN5Q96P11 429 aaKnown RBP16.48■□□□□ 0.23
LIG1-206ENST00000594067 UPF3AQ9H1J1 476 aaKnown RBP16.48■□□□□ 0.23
LIG1-206ENST00000594067 POLR3BQ9NW08 1133 aaPredicted RBP16.48■□□□□ 0.23
LIG1-206ENST00000594067 ABI2Q9NYB9 513 aaPredicted RBP16.48■□□□□ 0.23
LIG1-206ENST00000594067 EGFL7Q9UHF1 273 aa16.48■□□□□ 0.23
LIG1-206ENST00000594067 NME4O00746 187 aa16.47■□□□□ 0.23
LIG1-206ENST00000594067 DLGAP1O14490 977 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms