RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SOD1P00441 154 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 SYPP08247 313 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 ZNF30P17039 623 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 HLA-DPA1P20036 260 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 NFKBIAP25963 317 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 CASQ1P31415 396 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 IL9RQ01113 521 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 PTPRCAPQ14761 206 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 STPG1Q5TH74 334 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 CCDC70Q6NSX1 233 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 MICALCLQ6ZW33 695 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 TMC3Q7Z5M5 1100 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 ATL2Q8NHH9 583 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 NAP1L3Q99457 506 aaPredicted RBP19.52■□□□□ 0.72
CLN3-225ENST00000566824 C1QTNF7Q9BXJ2 289 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 RAB6BQ9NRW1 208 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 NEU2Q9Y3R4 380 aa19.52■□□□□ 0.72
CLN3-225ENST00000566824 DNAH14Q0VDD8 3507 aa19.52■□□□□ 0.71
CLN3-225ENST00000566824 AP2A1O95782 977 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 FGF1P05230 155 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 TPH1P17752 444 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 GRIA1P42261 906 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 FZD2Q14332 565 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 ZNF423Q2M1K9 1284 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 ZNF542PQ5EBM4 170 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 PNCKQ6P2M8 343 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 CCDC137Q6PK04 289 aaKnown RBP19.51■□□□□ 0.71
CLN3-225ENST00000566824 BLOC1S5Q8TDH9 187 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 APOOQ9BUR5 198 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 LGR4Q9BXB1 951 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 DDX47Q9H0S4 455 aaKnown RBP19.51■□□□□ 0.71
CLN3-225ENST00000566824 ZFYVE1Q9HBF4 777 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 BPIFA1Q9NP55 256 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 TMEM9BQ9NQ34 198 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 PAK5Q9P286 719 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 KCTD3Q9Y597 815 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 SPINT3P49223 89 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 VPS41P49754 854 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 TERF1P54274 439 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 LMNB2Q03252 620 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 SEMA5AQ13591 1074 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 PDE1CQ14123 709 aaPredicted RBP19.51■□□□□ 0.71
CLN3-225ENST00000566824 UAP1L1Q3KQV9 507 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 ESRP1Q6NXG1 681 aaKnown RBP19.51■□□□□ 0.71
CLN3-225ENST00000566824 GPR26Q8NDV2 337 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 TRIM44Q96DX7 344 aaPredicted RBP19.51■□□□□ 0.71
CLN3-225ENST00000566824 RIOK2Q9BVS4 552 aaKnown RBP19.51■□□□□ 0.71
CLN3-225ENST00000566824 GPR63Q9BZJ6 419 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 ZDHHC5Q9C0B5 715 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 ARNT2Q9HBZ2 717 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 GDF3Q9NR23 364 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 KLF15Q9UIH9 416 aa19.51■□□□□ 0.71
CLN3-225ENST00000566824 TCRBV7S3A2A0A539 114 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 KRT14P02533 472 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 TRIM23P36406 574 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 FDFT1P37268 417 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 RABIFP47224 123 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 OVGP1Q12889 678 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 EIF2B5Q13144 721 aaKnown RBP19.5■□□□□ 0.71
CLN3-225ENST00000566824 MTM1Q13496 603 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 OR52K1Q8NGK4 314 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 AP2M1Q96CW1 435 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 ELF4Q99607 663 aaPredicted RBP19.5■□□□□ 0.71
CLN3-225ENST00000566824 LRRC40Q9H9A6 602 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 DNAAF2Q9NVR5 837 aaKnown RBP19.5■□□□□ 0.71
CLN3-225ENST00000566824 ARL5AQ9Y689 179 aa19.5■□□□□ 0.71
CLN3-225ENST00000566824 ARID1BQ8NFD5 2236 aaPredicted RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 ZNF106Q9H2Y7 1883 aaKnown RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 SPTY2D1-AS1A0A0U1RR47 76 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 GOLGA6CA6NDK9 693 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 GOLGA6BA6NDN3 693 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 FOXD2O60548 495 aaPredicted RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 GOLGA6DP0CG33 693 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 BPIP17213 487 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 PTGIRP43119 386 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 ATXN3P54252 364 aaPredicted RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 DPTQ07507 201 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 BNIP3Q12983 259 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 RSPO4Q2I0M5 234 aaPredicted RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 ALS2CLQ60I27 953 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 CCHCR1Q8TD31 782 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 PTCD2Q8WV60 388 aaKnown RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 SKA1Q96BD8 255 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 PPP1R2P1Q96PQ5 205 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 TCEAL2Q9H3H9 227 aaPredicted RBP19.49■□□□□ 0.71
CLN3-225ENST00000566824 GOLGA6AQ9NYA3 693 aa19.49■□□□□ 0.71
CLN3-225ENST00000566824 PLXNB3Q9ULL4 1909 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 GOLGA6L10A0A0M3HER8 536 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 A0A1B0GTQ1 180 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 TMEM202A6NGA9 273 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 FADS2P1A8MWK0 482 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 SCAMP1O15126 338 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 SUN1O94901 812 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 CER1O95813 267 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 CD59P13987 128 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 CA5AP35218 305 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 ACTN2P35609 894 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 TNNT3P45378 269 aaPredicted RBP19.48■□□□□ 0.71
CLN3-225ENST00000566824 FNTAP49354 379 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 YPEL5P62699 121 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms