RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	WDR63	Q8IWG1	891 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	RPAP2	Q8IXW5	612 aa	Predicted RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	ADGRF2	Q8IZF7	708 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	C17orf53	Q8N3J3	647 aa	Predicted RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	AGBL3	Q8NEM8	1001 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	PPP1R13B	Q96KQ4	1090 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	NEUROD6	Q96NK8	337 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	CTAGE1	Q96RT6	745 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	NDST4	Q9H3R1	872 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	PDZD7	Q9H5P4	517 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	MKKS	Q9NPJ1	570 aa	Predicted RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	RCOR1	Q9UKL0	485 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	FZD10	Q9ULW2	581 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	PCDHGB4	Q9UN71	923 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	MTMR6	Q9Y217	621 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	STON1	Q9Y6Q2	735 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442		A0A1B0GVM2	712 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	C1orf226	A1L170	272 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442		A8MZ25	164 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	VCY	O14598	125 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	ASAP2	O43150	1006 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	SPRY3	O43610	288 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	SOX30	O94993	753 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	VNN2	O95498	520 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	CRYAB	P02511	175 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	CSH1	P0DML2	217 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	CSH2	P0DML3	217 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	CD58	P19256	250 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	PSMB10	P40306	273 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	PIK3CA	P42336	1068 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	RFX2	P48378	723 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	COMP	P49747	757 aa	Predicted RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	NUDT6	P53370	316 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	SNX16	P57768	344 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	CHAF1B	Q13112	559 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	IRF3	Q14653	427 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	NAB2	Q15742	525 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	EIF2S3L	Q2VIR3	472 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	KIAA0930	Q6ICG6	404 aa	Predicted RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	C16orf54	Q6UWD8	224 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	TEX11	Q8IYF3	940 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	AADAT	Q8N5Z0	425 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	IGSF8	Q969P0	613 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	CENPO	Q9BU64	300 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	IFIH1	Q9BYX4	1025 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	HIPK2	Q9H2X6	1198 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	ESRP2	Q9H6T0	727 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	HINT3	Q9NQE9	182 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	IL36RN	Q9UBH0	155 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	R3HDM2	Q9Y2K5	976 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	PAM16	Q9Y3D7	125 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	SESN1	Q9Y6P5	492 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	MAU2	Q9Y6X3	613 aa		4.53	□□□□□ -1.68
CHD9-215	ENST00000565442	KAT6B	Q8WYB5	2073 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	TTC3	P53804	2025 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442		A0A1W2PQ09	198 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	OR6C75	A6NL08	312 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442		H3BQ06	376 aa	Predicted RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	TSPAN9	O75954	239 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	FTCD	O95954	541 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	RB1	P06400	928 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	GABRB1	P18505	474 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	GPT	P24298	496 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	GCH1	P30793	250 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ACSL1	P33121	698 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	RPL3	P39023	403 aa	Known RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ABAT	P80404	500 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ROR2	Q01974	943 aa	Known RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ACVR2B	Q13705	512 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ASTE1	Q2TB18	679 aa	Predicted RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ZNF628	Q5EBL2	1059 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	TYW3	Q6IPR3	259 aa	Known RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	PQLC2	Q6ZP29	291 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	BRINP3	Q76B58	766 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	SPATA6L	Q8N4H0	392 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	OIT3	Q8WWZ8	545 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	RRNAD1	Q96FB5	475 aa	Known RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	ELMOD3	Q96FG2	381 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	CALML4	Q96GE6	196 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	NCAPG	Q9BPX3	1015 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	SRSF8	Q9BRL6	282 aa	Known RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	PCGF1	Q9BSM1	259 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	MAK16	Q9BXY0	300 aa	Known RBP	4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	KCNN2	Q9H2S1	579 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	PPP1R3E	Q9H7J1	279 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	SETD4	Q9NVD3	440 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	CDC14A	Q9UNH5	594 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	RABGAP1	Q9Y3P9	1069 aa		4.52	□□□□□ -1.69
CHD9-215	ENST00000565442	IGHV4-28	A0A0C4DH34	117 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	HSPA12A	O43301	675 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	SMAD6	O43541	496 aa	Known RBP	4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	HCRTR2	O43614	444 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	ZIC3	O60481	467 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	TOMM40	O96008	361 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	CAMP	P49913	170 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	MXI1	P50539	228 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	METAP2	P50579	478 aa	Known RBP eCLIP	4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	IK	Q13123	557 aa	Predicted RBP	4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	EFNB3	Q15768	340 aa		4.51	□□□□□ -1.69
CHD9-215	ENST00000565442	KRT24	Q2M2I5	525 aa		4.51	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms