RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PSMA4P25789 261 aaKnown RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 CCNA1P78396 465 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 DSC2Q02487 901 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 GALNT2Q10471 571 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 FOXD4Q12950 439 aaPredicted RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 MAPK11Q15759 364 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 FAM187BQ17R55 369 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 ZNF484Q5JVG2 852 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 SPRYD7Q5W111 196 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 PDZD4Q76G19 769 aaPredicted RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 C14orf80Q86SX3 495 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 CENPSQ8N2Z9 138 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 BLOC1S5Q8TDH9 187 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 PLEKHA8Q96JA3 519 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 CCDC90BQ9GZT6 254 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 TUBB1Q9H4B7 451 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 PLGRKTQ9HBL7 147 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 POLE4Q9NR33 117 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 BLOC1S6Q9UL45 172 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 SH3GLB1Q9Y371 365 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 TCAF1Q9Y4C2 921 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 U3KQV3 271 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 J3KR12 359 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 GPR39O43194 453 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 DYNC1LI2O43237 492 aaPredicted RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 TCF3P15923 654 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 FSHRP23945 695 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 SLC6A2P23975 617 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 FASP25445 335 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 CCR1P32246 355 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 AGTR2P50052 363 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 CLCNKBP51801 687 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 WNT3AP56704 352 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 MTPNP58546 118 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 NRG1Q02297 640 aaPredicted RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 NFYCQ13952 458 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 NR1D2Q14995 579 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 NOTUMQ6P988 496 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 IFNLR1Q8IU57 520 aaPredicted RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 TBC1D15Q8TC07 691 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 RDH11Q8TC12 318 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 MRGPRX2Q96LB1 330 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 TBATAQ96M53 351 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 PPM1MQ96MI6 270 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 MROH8Q9H579 483 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 ANKRD6Q9Y2G4 727 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 COQ6Q9Y2Z9 468 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 SLCO1B7G3V0H7 640 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 HMBSP08397 361 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 LTA4HP09960 611 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 OR4Q2P0C623 313 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 CYP2C9P11712 490 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 SEMA3BQ13214 749 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 RFTN1Q14699 578 aaPredicted RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 HERC3Q15034 1050 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 ZBED5Q49AG3 693 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 EGFLAMQ63HQ2 1017 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 GRAMD4Q6IC98 578 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 PPP4R4Q6NUP7 873 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 TWIST2Q8WVJ9 160 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 NT5C3BQ969T7 300 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 SENP8Q96LD8 212 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 GAD1Q99259 594 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 ZNF408Q9H9D4 720 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 GLOD4Q9HC38 313 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 FAIMQ9NVQ4 179 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 GTF2IRD1Q9UHL9 959 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 INVSQ9Y283 1065 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 ADAM23O75077 832 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 CRCPO75575 148 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 CNTN5O94779 1100 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 CDK14O94921 469 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 HSPA1AP0DMV8 641 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 HSPA1BP0DMV9 641 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 HSPA8P11142 646 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 MAGP20916 626 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 GPX3P22352 226 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 PRKACGP22612 351 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 SHMT2P34897 504 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 PRKAA2P54646 552 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 RPL26P61254 145 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 UFM1P61960 85 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 PHEXP78562 749 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 IL1RL1Q01638 556 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 CBLBQ13191 982 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 OR4D1Q15615 310 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 ARL13BQ3SXY8 428 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 UNC50Q53HI1 259 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 TAPT1Q6NXT6 567 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 LARP4Q71RC2 724 aaKnown RBP eCLIP12.32□□□□□ -0.443e-8■■□□□ 12.3
LDLR-205ENST00000557933 RBM12BQ8IXT5 1001 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 RAVER1Q8IY67 606 aaKnown RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 LRRC52Q8N7C0 313 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 FAM86B1Q8N7N1 296 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 MEAF6Q9HAF1 191 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 SMURF2Q9HAU4 748 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 TBC1D23Q9NUY8 699 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 IFT80Q9P2H3 777 aaPredicted RBP12.32□□□□□ -0.44
LDLR-205ENST00000557933 RAD54BQ9Y620 910 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 ARL5AQ9Y689 179 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms