RNA–Protein interactions for RNA: ENST00000545688.5

SNHG1-224, Transcript of small nucleolar RNA host gene 1, human

TSL 3

Gene SNHG1, Length 610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-224	ENST00000545688	SCRT2	Q9NQ03	307 aa		4.62	□□□□□ -1.67
SNHG1-224	ENST00000545688	BEX4	Q9NWD9	120 aa	Predicted RBP	4.62	□□□□□ -1.67
SNHG1-224	ENST00000545688	TAAR2	Q9P1P5	351 aa		4.62	□□□□□ -1.67
SNHG1-224	ENST00000545688	CNOT7	Q9UIV1	285 aa	Known RBP	4.62	□□□□□ -1.67
SNHG1-224	ENST00000545688	KIF13A	Q9H1H9	1805 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	TMEM202	A6NGA9	273 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	PIP5K1C	O60331	668 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	ZG16	O60844	167 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	KRT10	P13645	584 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	S1PR1	P21453	382 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	TIMP3	P35625	211 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	DDIT3	P35638	169 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	FMO5	P49326	533 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	CLCNKA	P51800	687 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	PPP2R5B	Q15173	497 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	HIST2H2AC	Q16777	129 aa	Predicted RBP	4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	PLA2G4F	Q68DD2	849 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	HIST2H2BC	Q6DN03	193 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	HIST2H2BD	Q6DRA6	164 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	CPLX2	Q6PUV4	134 aa	Known RBP	4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	WDR63	Q8IWG1	891 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	ZNF34	Q8IZ26	560 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	DMBX1	Q8NFW5	382 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	OR2AK2	Q8NG84	335 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	MAGEC3	Q8TD91	643 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	ABTB1	Q969K4	478 aa	Predicted RBP	4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	FBXO17	Q96EF6	278 aa		4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	FBXO9	Q9UK97	447 aa	Predicted RBP	4.61	□□□□□ -1.67
SNHG1-224	ENST00000545688	CAPN9	O14815	690 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	TF	P02787	698 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	MAOA	P21397	527 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	PSMC2	P35998	433 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	HAL	P42357	657 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	HNRNPH2	P55795	449 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	RNPS1	Q15287	305 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	SLC45A4	Q5BKX6	768 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	LCE1F	Q5T754	118 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	TXNDC8	Q6A555	127 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	LRRC8D	Q7L1W4	858 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	EPHX4	Q8IUS5	362 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.6	□□□□□ -1.67	3e-7	■■■■■ 36.2
SNHG1-224	ENST00000545688	C1orf87	Q8N0U7	546 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	HUS1B	Q8NHY5	278 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	NOC3L	Q8WTT2	800 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	TRIM63	Q969Q1	353 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	CDCA5	Q96FF9	252 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	TKTL2	Q9H0I9	626 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	TMEM30A	Q9NV96	361 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	HCN3	Q9P1Z3	774 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	PADI1	Q9ULC6	663 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	AMDHD2	Q9Y303	409 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	FGD5	Q6ZNL6	1462 aa		4.6	□□□□□ -1.67
SNHG1-224	ENST00000545688	FAM72C	H0Y354	149 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	MAPKBP1	O60336	1514 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	GUCY1B2	O75343	617 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	AMBP	P02760	352 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	FGF5	P12034	268 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	USP8	P40818	1118 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	RAD23B	P54727	409 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	LINC01547	P58512	204 aa	Predicted RBP	4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	PPFIA1	Q13136	1202 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	SHROOM2	Q13796	1616 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	CEP170	Q5SW79	1584 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	FAM72A	Q5TYM5	149 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	FAM72D	Q6L9T8	149 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	KCTD18	Q6PI47	426 aa	Predicted RBP	4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	NFE4	Q86UQ8	179 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	FAM72B	Q86X60	149 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	KMT5C	Q86Y97	462 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	DUX3	Q96PT4	197 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	CMKLR1	Q99788	373 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	NDST4	Q9H3R1	872 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	PPP1R3E	Q9H7J1	279 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	MMP25	Q9NPA2	562 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	GPR108	Q9NPR9	543 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	TMEM160	Q9NX00	188 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	TCF19	Q9Y242	345 aa		4.59	□□□□□ -1.67
SNHG1-224	ENST00000545688	GRIN2A	Q12879	1464 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	GOLGA6L9	A6NEM1	432 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	GAGE10	A6NGK3	116 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	EIF3F	O00303	357 aa	Predicted RBP	4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	HMGB1	P09429	215 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	MYOD1	P15172	320 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	CD53	P19397	219 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	CORO1A	P31146	461 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	CDKN1A	P38936	164 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	METAP2	P50579	478 aa	Known RBP eCLIP	4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	PITX1	P78337	314 aa	Predicted RBP	4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	KRT24	Q2M2I5	525 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	STXBP5	Q5T5C0	1151 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	LRRTM4	Q86VH4	590 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	SPATA6L	Q8N4H0	392 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	SLC24A4	Q8NFF2	622 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	ALG14	Q96F25	216 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	MPHOSPH8	Q99549	860 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	HERPUD2	Q9BSE4	406 aa		4.58	□□□□□ -1.68
SNHG1-224	ENST00000545688	GLIS2	Q9BZE0	524 aa	Predicted RBP	4.58	□□□□□ -1.68

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