RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 EZH1Q92800 747 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 MRRFQ96E11 262 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 OXNAD1Q96HP4 312 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 ZNF419Q96HQ0 510 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 SRPK1Q96SB4 655 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 RBM15Q96T37 977 aaKnown RBP eCLIP7.45□□□□□ -1.22
CD44-228ENST00000528455 GORASP1Q9BQQ3 440 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 OSBPL1AQ9BXW6 950 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 ADGRE3Q9BY15 652 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CEP41Q9BYV8 373 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 FOXQ1Q9C009 403 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 DPH5Q9H2P9 285 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 ATP13A3Q9H7F0 1226 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 FBRSQ9HAH7 460 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 LTB4R2Q9NPC1 389 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 ZDHHC18Q9NUE0 388 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 FAM86C1Q9NVL1 165 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 MTRF1LQ9UGC7 380 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 RPL26L1Q9UNX3 145 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 SHOC2Q9UQ13 582 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 PPIL1Q9Y3C6 166 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 STON1Q9Y6Q2 735 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 F5P12259 2224 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 MYO15AQ9UKN7 3530 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 SDR42E2A6NKP2 422 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PROB1E7EW31 1015 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 TRAFD1O14545 582 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 HTRA2O43464 458 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 ATG13O75143 517 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PMPCBO75439 489 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 ALX3O95076 343 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 NDST3O95803 873 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 MT-CYBP00156 380 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 EGFP01133 1207 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PRNPP04156 253 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 CD72P21854 359 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 NME2P22392 152 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 SERPINA4P29622 427 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 NBL1P41271 181 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 IL12RB1P42701 662 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 MAGEA9P43362 315 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 TNNT3P45378 269 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 RGRP47804 291 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 VPS41P49754 854 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 NUMBP49757 651 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 CCNHP51946 323 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 WNT3AP56704 352 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 CCDC15Q0P6D6 951 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 CDH17Q12864 832 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 FZD5Q13467 585 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 LAMB3Q13751 1172 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 LRRC32Q14392 662 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 HLTFQ14527 1009 aaKnown RBP eCLIP7.44□□□□□ -1.22
CD44-228ENST00000528455 BRD3Q15059 726 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PLA2G4EQ3MJ16 856 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 FNDC3BQ53EP0 1204 aaKnown RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 EOGTQ5NDL2 527 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 EGFLAMQ63HQ2 1017 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 NAIF1Q69YI7 327 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 C22orf39Q6P5X5 142 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 KDELC1Q6UW63 502 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 ZDHHC24Q6UX98 284 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 GDPD4Q6W3E5 623 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 DPY19L3Q6ZPD9 716 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 DSG4Q86SJ6 1040 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PDZD3Q86UT5 571 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 CAND1Q86VP6 1230 aaKnown RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 C1orf210Q8IVY1 113 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 SFTPA1Q8IWL2 248 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 SULF2Q8IWU5 870 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 CHPFQ8IZ52 775 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PDIK1LQ8N165 341 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 ZCCHC9Q8N567 271 aaKnown RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 IL17RCQ8NAC3 791 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 FBXO25Q8TCJ0 367 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 HNRNPLLQ8WVV9 542 aaKnown RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 WFDC12Q8WWY7 111 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 OR8D1Q8WZ84 308 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PRCCQ92733 491 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 VOPP1Q96AW1 172 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 ECHDC3Q96DC8 303 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 LRRC39Q96DD0 335 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 FEM1CQ96JP0 617 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 NSMCE3Q96MG7 304 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 GABRG3Q99928 467 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 C19orf43Q9BQ61 176 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 MLPHQ9BV36 600 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 EPC1Q9H2F5 836 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 TNKS2Q9H2K2 1166 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 LMAN1LQ9HAT1 526 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 XAB2Q9HCS7 855 aaKnown RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 CASS4Q9NQ75 786 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PRSS16Q9NQE7 514 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 UBP1Q9NZI7 540 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 DLGAP2Q9P1A6 1054 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 DKK3Q9UBP4 350 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 IL36AQ9UHA7 158 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 EVLQ9UI08 416 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 NFU1Q9UMS0 254 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 PHTF1Q9UMS5 762 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms