RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	RRM1	P23921	792 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	KRT9	P35527	623 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	EIF5	P55010	431 aa	Known RBP	4.67	□□□□□ -1.66
CD44-223	ENST00000526553	MPP1	Q00013	466 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	SORD	Q00796	357 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	NAE1	Q13564	534 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	FGFBP1	Q14512	234 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	ZRSR1	Q15695	479 aa	Known RBP	4.67	□□□□□ -1.66
CD44-223	ENST00000526553	ALG11	Q2TAA5	492 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	EIF2S3L	Q2VIR3	472 aa	Known RBP	4.67	□□□□□ -1.66
CD44-223	ENST00000526553	ZNF718	Q3SXZ3	478 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	GGNBP1	Q5YKI7	109 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	CDC73	Q6P1J9	531 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	WDR73	Q6P4I2	378 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	KCTD18	Q6PI47	426 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-223	ENST00000526553	UNQ6126/PRO20091	Q6UXV3	157 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	NR2C2AP	Q86WQ0	139 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	NME8	Q8N427	588 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	SPATA6L	Q8N4H0	392 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	PPP1R3E	Q9H7J1	279 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	UBTD1	Q9HAC8	227 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	MMP25	Q9NPA2	562 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	HAO1	Q9UJM8	370 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	VDAC3	Q9Y277	283 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	NISCH	Q9Y2I1	1504 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	HNRNPCL2	B2RXH8	293 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TULP2	O00295	520 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	BUB3	O43684	328 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	SEC14L2	O76054	403 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	FTCD	O95954	541 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	F7	P08709	466 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	RXRG	P48443	463 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	HARS2	P49590	506 aa	Known RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	CLCNKA	P51800	687 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	HNRNPH2	P55795	449 aa	Known RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	DLX5	P56178	289 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	SLC45A4	Q5BKX6	768 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	HIST2H2BC	Q6DN03	193 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	HIST2H2BD	Q6DRA6	164 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	SLC36A4	Q6YBV0	504 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TUBA1A	Q71U36	451 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	CUZD1	Q86UP6	607 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	EXOC3L1	Q86VI1	746 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	PCYOX1L	Q8NBM8	494 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	SECTM1	Q8WVN6	248 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	SORCS1	Q8WY21	1168 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	FIG4	Q92562	907 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	RND1	Q92730	232 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	HDAC2	Q92769	488 aa	Known RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	GTF3C6	Q969F1	213 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TMEM19	Q96HH6	336 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TUBA1C	Q9BQE3	449 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TMEM47	Q9BQJ4	181 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	RANBP17	Q9H2T7	1088 aa	Known RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	NDST4	Q9H3R1	872 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	INTS6	Q9UL03	887 aa	Known RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TTC7A	Q9ULT0	858 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-223	ENST00000526553	CEPT1	Q9Y6K0	416 aa		4.66	□□□□□ -1.66
CD44-223	ENST00000526553	TAF1	P21675	1872 aa		4.65	□□□□□ -1.66
CD44-223	ENST00000526553	PRAC2	D3DTV9	90 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	UBL4A	P11441	157 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	CASP6	P55212	293 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	RPL7A	P62424	266 aa	Known RBP	4.65	□□□□□ -1.67
CD44-223	ENST00000526553	TROAP	Q12815	778 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	ZBTB17	Q13105	803 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	OLIG2	Q13516	323 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	DRAP1	Q14919	205 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-223	ENST00000526553	COL28A1	Q2UY09	1125 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	FAM76B	Q5HYJ3	339 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	C9orf50	Q5SZB4	431 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	PQLC2	Q6ZP29	291 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	SFR1	Q86XK3	245 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF441	Q8N8Z8	693 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	LNX1	Q8TBB1	728 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-223	ENST00000526553	METTL6	Q8TCB7	284 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	NEK9	Q8TD19	979 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	PSPC1	Q8WXF1	523 aa	Known RBP	4.65	□□□□□ -1.67
CD44-223	ENST00000526553	STRA6	Q9BX79	667 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	USP44	Q9H0E7	712 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	EVA1A	Q9H8M9	152 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	ABI3	Q9P2A4	366 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553	CAPN7	Q9Y6W3	813 aa		4.65	□□□□□ -1.67
CD44-223	ENST00000526553		A0A0G2JPF8	293 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553		A0A1W2PPH5	198 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553		A0A1W2PRG0	241 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	NPIPB15	A6NHN6	443 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553	HNRNPCL3	B7ZW38	293 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF587B	E7ETH6	402 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	SNAP23	O00161	211 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	KRT86	O43790	486 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	HNRNPCL1	O60812	293 aa	Known RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553	BAIAP3	O94812	1187 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	DDN	O94850	711 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF432	O94892	652 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	HNRNPCL4	P0DMR1	293 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	MCM3	P25205	808 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	MT3	P25713	68 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	PIP4K2A	P48426	406 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553	NLRP5	P59047	1200 aa		4.64	□□□□□ -1.67

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