RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 HMOX1P09601 288 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SBK3P0C264 359 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM86B2P0C5J1 330 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SUPT20HL2P0C7V6 817 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3HP0C7X1 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC192P0DO97 292 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARP10275 920 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NR2F6P10588 404 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GHRP10912 638 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 IRF1P10914 325 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPA5P11021 654 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDHBP11177 359 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIM1P11309 404 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTN1P12814 892 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALADP13716 330 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRG2P13727 222 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DAOP14920 347 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDGFRAP16234 1089 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 FERP16591 822 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXB9P17482 250 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTPS1P17812 591 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GABRB1P18505 474 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM21P19474 475 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNA3P22001 575 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACHEP22303 614 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANOS1P23352 680 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPTP24298 496 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP3A7P24462 503 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJB1P25685 340 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTPN3P26045 913 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MST1P26927 711 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMOD1P28289 359 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXD10P28358 340 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCSK1P29120 753 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPHA3P29320 983 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCND2P30279 289 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPIFP30405 207 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 AVPR2P30518 371 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 FMO4P31512 558 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 UQCRC1P31930 480 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ICAM3P32942 547 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP2C18P33260 490 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTKP33981 857 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPA1LP34931 641 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTNNB1P35222 781 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RFC4P35249 363 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNF1BP35680 557 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GJC1P36383 396 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GNL1P36915 607 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIPAP38571 399 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MDH1P40925 334 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL15P40933 162 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDKN2AP42771 156 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NR4A2P43354 598 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAGEA4P43358 317 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCR10P46092 362 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTIF2P46199 727 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSTM5P46439 218 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GABRB2P47870 512 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP5OP48047 213 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARCN1P48444 511 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD151P48509 253 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PXNP49023 591 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS41P49754 854 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNMTP50135 292 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPY4RP50391 375 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GATMP50440 423 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MXI1P50539 228 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PEX5P50542 639 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 BLKP51451 505 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCR3P51677 355 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARSEP51690 589 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS6KA3P51812 740 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PGDP52209 483 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DGKEP52429 567 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF135P52742 658 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DGKQP52824 942 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GBX2P52951 348 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MVDP53602 400 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PMS2P54278 862 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 OAZ1P54368 228 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRKAG1P54619 331 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAGLUP54802 743 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 VCPP55072 806 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MFAP4P55083 255 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASP9P55211 416 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP5IP56385 69 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LOXL3P58215 753 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 YBEYP58557 167 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTR1AP61163 376 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPL15P61313 204 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ST8SIA6P61647 398 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMC6P62333 389 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 YPEL5P62699 121 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 YWHAZP63104 245 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNA1P78396 465 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 COG7P83436 770 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGAP8P85298 464 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 EFNB1P98172 346 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TFAP4Q01664 338 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms