RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ELMO3Q96BJ8 720 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CPNE2Q96FN4 548 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 ITCHQ96J02 903 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SERPINB11Q96P15 392 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PRAM1Q96QH2 718 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ADAM2Q99965 735 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 WRAP53Q9BUR4 548 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC39A8Q9C0K1 460 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 NMNAT1Q9HAN9 279 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 C12orf10Q9HB07 376 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 NANSQ9NR45 359 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SMPD3Q9NY59 655 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 TJP2Q9UDY2 1190 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FETUBQ9UGM5 382 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MRPS7Q9Y2R9 242 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 PCDHGA8Q9Y5G5 932 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MAU2Q9Y6X3 613 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FAM205CA6NFA0 338 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 M0R036 132 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 IMPA2O14732 288 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 BACH1O14867 736 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 HCN1O60741 890 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 NDUFS2O75306 463 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DIRAS1O95057 198 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LYPLA2O95372 231 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CYP1A1P04798 512 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 IL3P08700 152 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SNRPA1P09661 255 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 PABPC4LP0CB38 370 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 TPBGLP0DKB5 382 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PSKH1P11801 424 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SOX11P35716 441 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MAGEA11P43364 429 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC18A1P54219 525 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ATP5IP56385 69 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 GABARAPL2P60520 117 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 EIF4A1P60842 406 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 ST3GAL1Q11201 340 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LSAMPQ13449 338 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CBFBQ13951 182 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 EFHC2Q5JST6 749 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 KANK2Q63ZY3 851 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FCRLBQ6BAA4 426 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 WDR59Q6PJI9 974 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FAM198BQ6UWH4 519 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CHRDL2Q6WN34 429 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LARP4Q71RC2 724 aaKnown RBP eCLIP3.58□□□□□ -1.84
USP53-205ENST00000509769 SCUBE3Q8IX30 993 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RBFAQ8N0V3 343 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SMG8Q8ND04 991 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF540Q8NDQ6 660 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC13A3Q8WWT9 602 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 NSMAFQ92636 917 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ROPN1LQ96C74 230 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 C16orf58Q96GQ5 468 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SNX18Q96RF0 628 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 AGAP2Q99490 1192 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 VPS25Q9BRG1 176 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MTG1Q9BT17 334 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 C2orf49Q9BVC5 232 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 TASP1Q9H6P5 420 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 NT5DC2Q9H857 520 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 VAT1LQ9HCJ6 419 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 EMILIN3Q9NT22 766 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TMEM39AQ9NV64 488 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DNAJC28Q9NX36 388 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CKLFQ9UBR5 152 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RPS6KB2Q9UBS0 482 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TRPS1Q9UHF7 1281 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 HSPB11Q9Y547 144 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TNPO3Q9Y5L0 923 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 ABCC4O15439 1325 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 A0A1B0GVM2 712 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TTC26A0AVF1 554 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 C5orf60A6NFR6 353 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 OR6C70A6NIJ9 312 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 LRRC72A6NJI9 287 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SMLR1H3BR10 107 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 HS6ST1O60243 411 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MED24O75448 989 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FARS2O95363 451 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 NPPAP01160 153 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PRH1P02810 166 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MMP1P03956 469 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MMP10P09238 476 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ETS2P15036 469 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ITGB6P18564 788 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FSHRP23945 695 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CHMP24386 653 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ATP5C1P36542 298 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 LIFRP42702 1097 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLC1A4P43007 532 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RPS5P46782 204 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 AQP5P55064 265 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CAV3P56539 151 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CDK3Q00526 305 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 C2orf80Q0P641 193 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 NFX1Q12986 1120 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 GALEQ14376 348 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RRP1BQ14684 758 aaKnown RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms