RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 NSMCE3Q96MG7 304 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 ING2Q9H160 280 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 ATP13A3Q9H7F0 1226 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 PCDHGA11Q9Y5H2 935 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 CITO14578 2027 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SHROOM3Q8TF72 1996 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM47E-STBD1D6RA91 191 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 LSM1O15116 133 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 HTR1BP28222 390 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 PCYT1AP49585 367 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 GSK3BP49841 420 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 CLCN3P51790 818 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 PYCR3Q53H96 274 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 COQ5Q5HYK3 327 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 UNC93AQ86WB7 457 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 C2CD4AQ8NCU7 369 aaPredicted RBP17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SLC22A17Q8WUG5 538 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 OSCP1Q8WVF1 389 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 PHF21BQ96EK2 531 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 TEKT5Q96M29 485 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 NPY6RQ99463 290 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 VAT1Q99536 393 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 TRIM54Q9BYV2 358 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 ALG2Q9H553 416 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SLC52A3Q9NQ40 469 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 MTRRQ9UBK8 725 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 KLHL3Q9UH77 587 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SYNJ2BP-COX16A0A087WUM0 186 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 MSI1O43347 362 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 MYO1DO94832 1006 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 HTR1AP08908 422 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 CTF1Q16619 201 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 THAP5Q7Z6K1 395 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 SLC22A9Q8IVM8 553 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 KLHDC8BQ8IXV7 354 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 MIER2Q8N344 545 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 SMG8Q8ND04 991 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 NDRG1Q92597 394 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 HSFY1Q96LI6 401 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 BDH2Q9BUT1 245 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 TRIM8Q9BZR9 551 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 SPON1Q9HCB6 807 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 SCUBE2Q9NQ36 999 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 COX16Q9P0S2 106 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 VPS51Q9UID3 782 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 EVPLQ92817 2033 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 NRCAMQ92823 1304 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 BRCA1P38398 1863 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 HCRTO43612 131 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 DAB1O75553 588 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 MATN4O95460 622 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 CPB1P15086 417 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 IMPDH1P20839 514 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 ARSFP54793 590 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 SLC12A2P55011 1212 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 ZIK1Q3SY52 487 aaPredicted RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 C6orf183Q5T699 404 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 AGAP9Q5VTM2 703 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 ESRP1Q6NXG1 681 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 EFCAB12Q6NXP0 572 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 PLEKHG7Q6ZR37 379 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 SNX29P2Q8IUI4 249 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 MFSD4AQ8N468 514 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 OR6B3Q8NGW1 331 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 ZFP90Q8TF47 636 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 HDAC2Q92769 488 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 DPF3Q92784 378 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 MUL1Q969V5 352 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM149B1Q96BN6 582 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 OTUD5Q96G74 571 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 EHD1Q9H4M9 534 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 RMND5AQ9H871 391 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 TRPV5Q9NQA5 729 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 HPS4Q9NQG7 708 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 WARS2Q9UGM6 360 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 POU2F3Q9UKI9 436 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 GJA3Q9Y6H8 435 aa17.09■□□□□ 0.33
SQSTM1-211ENST00000506690 PPEF2O14830 753 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 MT-ND1P03886 318 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 RBP1P09455 135 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 NCK1P16333 377 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 ALDH3A2P51648 485 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 SEMA3BQ13214 749 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 DNASE1L3Q13609 305 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 NDUFA5Q16718 116 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 SPNS2Q8IVW8 549 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 BPIFB1Q8TDL5 484 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 KIF12Q96FN5 646 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 SGIP1Q9BQI5 828 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 ADNPQ9H2P0 1102 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 NTN4Q9HB63 628 aa17.08■□□□□ 0.33
SQSTM1-211ENST00000506690 TSC2P49815 1807 aa17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 C16orf96A6NNT2 1141 aa17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 M0QYT0 321 aa17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 LTA4HP09960 611 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 NR4A1P22736 598 aa17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 MAPRE1Q15691 268 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 KYAT1Q16773 422 aa17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 DPY19L1Q2PZI1 675 aa17.08■□□□□ 0.32
SQSTM1-211ENST00000506690 PGS1Q32NB8 556 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms