RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 PIRTP0C851 137 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 CD38P28907 300 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 PTGIRP43119 386 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 LMAN1P49257 510 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 CDK16Q00536 496 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 CKAP4Q07065 602 aaKnown RBP11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 OVGP1Q12889 678 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 GPS1Q13098 491 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 MSLNQ13421 630 aaPredicted RBP11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 OLIG2Q13516 323 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 SPARCL1Q14515 664 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 LRRC14Q15048 493 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 TEAD4Q15561 434 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 CSRP2Q16527 193 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 WHAMMP3Q1A5X7 153 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 WSCD2Q2TBF2 565 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 Q6ZVL8 140 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 SYDE1Q6ZW31 735 aaPredicted RBP11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 LYSMD3Q7Z3D4 306 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 HSD11B1LQ7Z5J1 315 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 TMC3Q7Z5M5 1100 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 ABI3BPQ7Z7G0 1075 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 IQCHQ86VS3 1027 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 NLRP8Q86W28 1048 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 KLHL7Q8IXQ5 586 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 NRSN1Q8IZ57 195 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 TP53I13Q8NBR0 393 aaPredicted RBP11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 CCHCR1Q8TD31 782 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 DTD2Q96FN9 168 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 BMFQ96LC9 184 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 APOL2Q9BQE5 337 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 GPR63Q9BZJ6 419 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 CAPN10Q9HC96 672 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 FZD3Q9NPG1 666 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 AASDHPPTQ9NRN7 309 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 SLC6A14Q9UN76 642 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 SPO11Q9Y5K1 396 aa11.9□□□□□ -0.5
PDLIM5-208ENST00000504489 GOLGA4Q13439 2230 aaKnown RBP11.9□□□□□ -0.51
PDLIM5-208ENST00000504489 A0A0U1RQS6 177 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 POM121BA6NF01 834 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 PATE3B3GLJ2 98 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TOR1BO14657 336 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 FPGTO14772 594 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 VILLO15195 856 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 FOXD2O60548 495 aaPredicted RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 MAGEC1O60732 1142 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 WNT1P04628 370 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TPSB2P20231 275 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TGM1P22735 817 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 IGFALSP35858 605 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 HMGCLP35914 325 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 MAGEA6P43360 314 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 SPINT3P49223 89 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 CSNK1EP49674 416 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 BASP1P80723 227 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 DPTQ07507 201 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 SPEM2Q0P670 501 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 PTK6Q13882 451 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 DHX34Q14147 1143 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 IRF4Q15306 451 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 PPP1R7Q15435 360 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TRIP13Q15645 432 aaPredicted RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TPSAB1Q15661 275 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TRIM61Q5EBN2 209 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 DENND2CQ68D51 928 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 KYAT3Q6YP21 454 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 GCNT7Q6ZNI0 430 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 ZNF765Q7L2R6 523 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 TTC30BQ8N4P2 665 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 DCLK2Q8N568 766 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 GPR161Q8N6U8 529 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 BRSK1Q8TDC3 778 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 SKA1Q96BD8 255 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 EID2BQ96D98 161 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 NUS1Q96E22 293 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 MYOCQ99972 504 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 C19orf43Q9BQ61 176 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 NUSAP1Q9BXS6 441 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 SEMA4GQ9NTN9 838 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 SHOC2Q9UQ13 582 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 GVINP1Q7Z2Y8 2422 aa11.89□□□□□ -0.51
PDLIM5-208ENST00000504489 A6NNZ2 444 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 TLR4O00206 839 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 AURKAO14965 403 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 GFRA3O60609 400 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 CFIP05156 583 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 SYPP08247 313 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 ETV3P41162 512 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 VPS41P49754 854 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 CLDN2P57739 230 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 PFN3P60673 137 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 YPEL5P62699 121 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 IRX4P78413 519 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 DR1Q01658 176 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 CDH17Q12864 832 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 MTM1Q13496 603 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 TAF1AQ15573 450 aaPredicted RBP11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 CCDC6Q16204 474 aa11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 ESRP1Q6NXG1 681 aaKnown RBP11.88□□□□□ -0.51
PDLIM5-208ENST00000504489 RFLNAQ6ZTI6 216 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms