RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CNTN5O94779 1100 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FAM58BPP0C7Q3 252 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RENBPP51606 427 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NDST2P52849 883 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NKX3-2P78367 333 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TUSC3Q13454 348 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LRRC26Q2I0M4 334 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PIM3Q86V86 326 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FUNDC1Q8IVP5 155 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LRTOMTQ8WZ04 291 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LZICQ8WZA0 190 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TADA1Q96BN2 335 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PTERQ96BW5 349 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SUSD3Q96L08 255 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SERPINB11Q96P15 392 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SEMA6AQ9H2E6 1030 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 COQ10BQ9H8M1 238 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 VPS45Q9NRW7 570 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATXN10Q9UBB4 475 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TMCO1Q9UM00 188 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CCDC85CA6NKD9 419 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MRASO14807 208 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NRP2O60462 931 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MT-CO1P00395 513 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ALDOCP09972 364 aaKnown RBP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TIAL1Q01085 375 aaKnown RBP eCLIP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ITKQ08881 620 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 DSC3Q14574 896 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ALFQ53S48 1182 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SIRPB2Q5JXA9 342 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FAM45BPQ6NSW5 357 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HACD2Q6Y1H2 254 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ARMCX6Q7L4S7 300 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CHERPQ8IWX8 916 aaKnown RBP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PGBD5Q8N414 524 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TEX26Q8N6G2 289 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ARRDC2Q8TBH0 407 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FAM45AQ8TCE6 357 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF597Q96LX8 424 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 UHRF1Q96T88 793 aaPredicted RBP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PRPF18Q99633 342 aaKnown RBP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TRMOQ9BU70 441 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC25A23Q9BV35 468 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SPAG4Q9NPE6 437 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 POLR3BQ9NW08 1133 aaPredicted RBP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GMPR2Q9P2T1 348 aaKnown RBP16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RNF11Q9Y3C5 154 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PLXNA3P51805 1871 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATP6AP2A0A1C7CYW4 349 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 H0YJX3 145 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ARVCFO00192 962 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LDB2O43679 373 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATP6AP2O75787 350 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATXN1LP0C7T5 689 aaKnown RBP16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RHOQP17081 205 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC26A3P40879 764 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATP4BP51164 291 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MYLK3Q32MK0 819 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MARC1Q5VT66 337 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SDHAF4Q5VUM1 108 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HMBOX1Q6NT76 420 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF549Q6P9A3 640 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LAYNQ6UX15 382 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 OR6P1Q8NGX9 317 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 EME1Q96AY2 570 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SCLYQ96I15 445 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZFRQ96KR1 1074 aaKnown RBP16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GRIP2Q9C0E4 1043 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CROTQ9UKG9 612 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TLR6Q9Y2C9 796 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF510Q9Y2H8 683 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQF3 1178 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 A0A1B0GTW7 788 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 KPNA6O60684 536 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATP6V1G1O75348 118 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SUPT7LO94864 414 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CSPG5O95196 566 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATP6V1B1P15313 513 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TYMPP19971 482 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GPX3P22352 226 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SCNN1BP51168 640 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CCL23P55773 120 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NFKB2Q00653 900 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TLE2Q04725 743 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 IKBKEQ14164 716 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NRF1Q16656 503 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MS4A13Q5J8X5 152 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MSANTD2Q6P1R3 559 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC39A5Q6ZMH5 540 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HERC6Q8IVU3 1022 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SCN4BQ8IWT1 228 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GABPB2Q8TAK5 448 aaPredicted RBP16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PSMG2Q969U7 264 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PABPC5Q96DU9 382 aaKnown RBP16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TMEM248Q9NWD8 314 aa16.09■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LOC285095A0A1B0GVY8 99 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC7A1P30825 629 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GPR15P49685 360 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ACADVLP49748 655 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TNK2Q07912 1038 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms