RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 NLE1Q9NVX2 485 aaPredicted RBP17.97■□□□□ 0.47
PDLIM7-207ENST00000486828 UBA2Q9UBT2 640 aaPredicted RBP17.97■□□□□ 0.47
PDLIM7-207ENST00000486828 ASB3Q9Y575 518 aa17.97■□□□□ 0.47
PDLIM7-207ENST00000486828 PCDHGA7Q9Y5G6 932 aa17.97■□□□□ 0.47
PDLIM7-207ENST00000486828 H3BNC9 293 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 ACOT8O14734 319 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 KDELR3O43731 214 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 RNASEH1O60930 286 aaKnown RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 PMLP29590 882 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 MSX2P35548 267 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 ATP4BP51164 291 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 ZNF140P52738 457 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 PSME3P61289 254 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 PDAP1Q13442 181 aaKnown RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 MED21Q13503 144 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 AGKQ53H12 422 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 REP15Q6BDI9 236 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 PRSS55Q6UWB4 352 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 TMEM173Q86WV6 379 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 BTBD9Q96Q07 612 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 UNC93B1Q9H1C4 597 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 TFB2MQ9H5Q4 396 aaKnown RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 MRPL40Q9NQ50 206 aaKnown RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 SPATS2LQ9NUQ6 558 aaKnown RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 SARDHQ9UL12 918 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 DTNAQ9Y4J8 743 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 BPTFQ12830 3046 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 FBP2O00757 339 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 MYCP01106 439 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 TSPAN8P19075 237 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 RGRP47804 291 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 OXCT1P55809 520 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 LRP8Q14114 963 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 ADGRE1Q14246 886 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 OR4D1Q15615 310 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 GRAMD1BQ3KR37 738 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 LARP4Q71RC2 724 aaKnown RBP eCLIP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 RAB44Q7Z6P3 723 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 NPAS4Q8IUM7 802 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 CLYBLQ8N0X4 340 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 RYBPQ8N488 228 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 PTGR2Q8N8N7 351 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 ICA1LQ8NDH6 482 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 EXT2Q93063 718 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 C19orf60Q96EN9 201 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 CEP295NLQ96MC4 621 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 TUBGCP5Q96RT8 1024 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 SPON2Q9BUD6 331 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 MRPL9Q9BYD2 267 aaKnown RBP17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 YIPF3Q9GZM5 350 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 CACNA2D2Q9NY47 1150 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 SPO11Q9Y5K1 396 aa17.96■□□□□ 0.47
PDLIM7-207ENST00000486828 HOXA2O43364 376 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 SNRPB2P08579 225 aaKnown RBP17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 VCLP18206 1134 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 UGT3A2Q3SY77 523 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 MMEL1Q495T6 779 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 AFTPHQ6ULP2 937 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 PDZD8Q8NEN9 1154 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 FBXO22Q8NEZ5 403 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 BCL7CQ8WUZ0 217 aaPredicted RBP17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 OVCA2Q8WZ82 227 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 ASB9Q96DX5 294 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 LRGUKQ96M69 825 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 NSMCE3Q96MG7 304 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 PRICKLE1Q96MT3 831 aaPredicted RBP17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 ATOH8Q96SQ7 321 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 DDX50Q9BQ39 737 aaKnown RBP17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 NACA2Q9H009 215 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 ADA2Q9NZK5 511 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 CCDC167Q9P0B6 97 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 ANKRD36A6QL64 1941 aa17.95■□□□□ 0.46
PDLIM7-207ENST00000486828 H3BMM5 538 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 UBXN8O00124 270 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 INSIG1O15503 277 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 CLDN11O75508 207 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 GJB5O95377 273 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 FGF4P08620 206 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 ZCCHC18P0CG32 403 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 PRSS56P0CW18 603 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 PIM1P11309 404 aaPredicted RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 MTHFD2P13995 350 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 CR2P20023 1033 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 CDH13P55290 713 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 RPS24P62847 133 aaKnown RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 SH3BP2P78314 561 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 BFSP2Q13515 415 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 TAF1AQ15573 450 aaPredicted RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 RNF220Q5VTB9 566 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 GLT6D1Q7Z4J2 308 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 PCDH20Q8N6Y1 951 aaKnown RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 PHC3Q8NDX5 983 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 SEPT8Q92599 483 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 ZNF512Q96ME7 567 aaPredicted RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 SLC25A23Q9BV35 468 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 MCOLN1Q9GZU1 580 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 SYTL2Q9HCH5 934 aa17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 PAK6Q9NQU5 681 aaPredicted RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 SUCOQ9UBS9 1254 aaKnown RBP17.94■□□□□ 0.46
PDLIM7-207ENST00000486828 RIMS3Q9UJD0 308 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms