RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-225	ENST00000376568	CNOT10	Q9H9A5	744 aa	Known RBP	13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	SIRPG	Q9P1W8	387 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	EFR3B	Q9Y2G0	817 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	MYOF	Q9NZM1	2061 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	FOCAD	Q5VW36	1801 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	SPAG6	O75602	509 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	BAG2	O95816	211 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	ITPKA	P23677	461 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	SULT2A1	Q06520	285 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	SLC30A9	Q6PML9	568 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	RFLNA	Q6ZTI6	216 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	SERPINA9	Q86WD7	417 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	MANSC1	Q9H8J5	431 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	HPS4	Q9NQG7	708 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	TMEM248	Q9NWD8	314 aa		13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	APOBEC2	Q9Y235	224 aa	Known RBP	13.54	□□□□□ -0.24
DDR1-225	ENST00000376568	GREB1L	Q9C091	1923 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	MID1	O15344	667 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	ATP8B1	O43520	1251 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	PRAMEF11	O60813	436 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	ARSD	P51689	593 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	ZNF135	P52742	658 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	TRAF2	Q12933	501 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	CRY1	Q16526	586 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	EXOC3L1	Q86VI1	746 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	NXNL1	Q96CM4	212 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	PRICKLE1	Q96MT3	831 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	CCT8L2	Q96SF2	557 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	HGH1	Q9BTY7	390 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	ENO1	P06733	434 aa	Known RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	PCNA	P12004	261 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	ACP5	P13686	325 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SERPINB8	P50452	374 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	TAS2R39	P59534	338 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	TTLL9	Q3SXZ7	439 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SPANXN3	Q5MJ09	141 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	RBM20	Q5T481	1227 aa	Known RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	MFSD4B	Q5TF39	518 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	FAM46C	Q5VWP2	391 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	LRRC8B	Q6P9F7	803 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	LINGO1	Q96FE5	620 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	FOXP3	Q9BZS1	431 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SNX15	Q9NRS6	342 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	XPR1	Q9UBH6	696 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568		C9JVG2	144 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	MUSK	O15146	869 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	PRNP	P04156	253 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SFSWAP	Q12872	951 aa	Known RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	PAFAH1B3	Q15102	231 aa	Known RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SIX1	Q15475	284 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	DGKK	Q5KSL6	1271 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	EGFLAM	Q63HQ2	1017 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SETD3	Q86TU7	594 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SFTPA1	Q8IWL2	248 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	NAT8L	Q8N9F0	302 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	LMNTD1	Q8N9Z9	388 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	TUBGCP3	Q96CW5	907 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	SAMD11	Q96NU1	681 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	FAM124B	Q9H5Z6	455 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	ZNF395	Q9H8N7	513 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	KCNK6	Q9Y257	313 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568		V9GYQ6	96 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	MICAL3	Q7RTP6	2002 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	DOCK8	Q8NF50	2099 aa		13.53	□□□□□ -0.24
DDR1-225	ENST00000376568	TCRBV21S2A2	A0A5A6	115 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	TK2	O00142	265 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	CYP17A1	P05093	508 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	AARS2	Q5JTZ9	985 aa	Known RBP	13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	C6orf163	Q5TEZ5	329 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	SIX5	Q8N196	739 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	SIDT2	Q8NBJ9	832 aa	Known RBP	13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	RPLP0P6	Q8NHW5	317 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	CAVIN3	Q969G5	261 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	PACSIN3	Q9UKS6	424 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	CAPN7	Q9Y6W3	813 aa		13.52	□□□□□ -0.24
DDR1-225	ENST00000376568	IFRD1	O00458	451 aa	Predicted RBP	13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	SCNN1A	P37088	669 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	SLC1A2	P43004	574 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	GALK1	P51570	392 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	IRF9	Q00978	393 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	UBE3A	Q05086	875 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	CPSF6	Q16630	551 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	TMEM220	Q6QAJ8	160 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	RIPOR1	Q6ZS17	1223 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	KIF2B	Q8N4N8	673 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	TRPC4AP	Q8TEL6	797 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	RHBG	Q9H310	441 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	FNIP2	Q9P278	1114 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	STK39	Q9UEW8	545 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	ERVW-1	Q9UQF0	538 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	VWA7	Q9Y334	891 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	TCAF1	Q9Y4C2	921 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568		H0Y3Z8	333 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	CD68	P34810	354 aa	Predicted RBP	13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	GJA4	P35212	333 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	HYAL1	Q12794	435 aa		13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	MRPL58	Q14197	206 aa	Known RBP	13.52	□□□□□ -0.25
DDR1-225	ENST00000376568	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	13.52	□□□□□ -0.25

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