RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 LIG3P49916 1009 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 ZNF75DP51815 510 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 COPB1P53618 953 aaKnown RBP11.23□□□□□ -0.61
RTN3-204ENST00000354497 LIMK2P53671 638 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 KRT85P78386 507 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 MMRN1Q13201 1228 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 TRA2AQ13595 282 aaKnown RBP eCLIP11.23□□□□□ -0.613e-6■□□□□ 8.6
RTN3-204ENST00000354497 SNAP47Q5SQN1 464 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 ACBD5Q5T8D3 534 aaPredicted RBP11.23□□□□□ -0.61
RTN3-204ENST00000354497 FAM102AQ5T9C2 384 aaPredicted RBP11.23□□□□□ -0.61
RTN3-204ENST00000354497 PAF1Q8N7H5 531 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 STARD8Q92502 1023 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 FUBP1Q96AE4 644 aaKnown RBP11.23□□□□□ -0.61
RTN3-204ENST00000354497 HMCESQ96FZ2 354 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 EXOC2Q96KP1 924 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 EFHD1Q9BUP0 239 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 FUT8Q9BYC5 575 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 ARFGAP3Q9NP61 516 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 PCDH12Q9NPG4 1184 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 SPTAN1Q13813 2472 aaKnown RBP11.23□□□□□ -0.61
RTN3-204ENST00000354497 NOTCH2Q04721 2471 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 TTLL8A6PVC2 850 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 A8MU76 341 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 GOLGA8SH3BPF8 625 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 MKRN2OSH3BPM6 223 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 K7EM74 188 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 POLR3GO15318 223 aaPredicted RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 INSIG1O15503 277 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 TEX33O43247 280 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 RAMP2O60895 175 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 ECEL1O95672 775 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 MAP4P27816 1152 aaKnown RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 CD1CP29017 333 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 GSDMDP57764 484 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 KIAA1024LP59773 190 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 MC1RQ01726 317 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 TMED1Q13445 227 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 SLMAPQ14BN4 828 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 SLC25A52Q3SY17 297 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 CAPRIN2Q6IMN6 1127 aaKnown RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 KLHL10Q6JEL2 608 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 ASB18Q6ZVZ8 466 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 ENOSF1Q7L5Y1 443 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 APLFQ8IW19 511 aaPredicted RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 RNF31Q96EP0 1072 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 PGAP3Q96FM1 320 aaPredicted RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 TTYH3Q9C0H2 523 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 ACBD3Q9H3P7 528 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 CARS2Q9HA77 564 aaKnown RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 PRDM8Q9NQV8 689 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 TMEM9Q9P0T7 183 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 DKK3Q9UBP4 350 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 PILRAQ9UKJ1 303 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 PCDHGC3Q9UN70 934 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.22□□□□□ -0.61
RTN3-204ENST00000354497 MRPS18BQ9Y676 258 aaKnown RBP11.22□□□□□ -0.61
RTN3-204ENST00000354497 LRP4O75096 1905 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 CHD5Q8TDI0 1954 aa11.22□□□□□ -0.61
RTN3-204ENST00000354497 BECN2A8MW95 431 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 RNF224P0DH78 156 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 COL8A1P27658 744 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 MAPKAPK2P49137 400 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 SUOXP51687 545 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 RAB15P59190 212 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 CLPPQ16740 277 aaPredicted RBP11.21□□□□□ -0.61
RTN3-204ENST00000354497 ERCC6LQ2NKX8 1250 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 COBLL1Q53SF7 1204 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 SLC30A9Q6PML9 568 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 PHLDB2Q86SQ0 1253 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 ZDHHC17Q8IUH5 632 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 LRRC8AQ8IWT6 810 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 OR4D9Q8NGE8 314 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 FAM71BQ8TC56 605 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 PATE1Q8WXA2 126 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 VOPP1Q96AW1 172 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 CFAP57Q96MR6 1250 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 CRACR2AQ9BSW2 395 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 GSDMCQ9BYG8 508 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 MAGEH1Q9H213 219 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 PPARGC1AQ9UBK2 798 aaKnown RBP11.21□□□□□ -0.61
RTN3-204ENST00000354497 ATP6V1DQ9Y5K8 247 aa11.21□□□□□ -0.61
RTN3-204ENST00000354497 SPENQ96T58 3664 aaKnown RBP11.21□□□□□ -0.62
RTN3-204ENST00000354497 PRSS38A1L453 326 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 B4E171 279 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 KDELR3O43731 214 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 SEMA7AO75326 666 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 FGF1P05230 155 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 THRAP10827 490 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 CCNB1P14635 433 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 RHOQP17081 205 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 AK4P27144 223 aaPredicted RBP11.2□□□□□ -0.62
RTN3-204ENST00000354497 CSF2RBP32927 897 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 MAN1A1P33908 653 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 FLT3P36888 993 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 TSPAN7P41732 249 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 GNPDA1P46926 289 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 ATP11AP98196 1134 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 APBA1Q02410 837 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 PTK2Q05397 1052 aa11.2□□□□□ -0.62
RTN3-204ENST00000354497 ILF3Q12906 894 aaKnown RBP eCLIP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms