RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GBF1Q92538 1859 aa21.77■■□□□ 1.07
SHMT1-202ENST00000352886 E7ENX8 843 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 H3BMM5 538 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 NBNO60934 754 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 ATP5C1P36542 298 aaKnown RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 RGRP47804 291 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 IRX1P78414 480 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 SMARCB1Q12824 385 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 MTA1Q13330 715 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 C5orf22Q49AR2 442 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 SPATA24Q86W54 205 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 C3orf30Q96M34 536 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 AARSD1Q9BTE6 412 aaKnown RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 NACA2Q9H009 215 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 POPDC3Q9HBV1 291 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 FBRSL1Q9HCM7 1045 aaKnown RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 DNMT3LQ9UJW3 386 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 UBA6A0AVT1 1052 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 PPP6CO00743 305 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 SNRPB2P08579 225 aaKnown RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 RPS24P62847 133 aaKnown RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 FOLH1Q04609 750 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 ILF2Q12905 390 aaKnown RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 PFKFB4Q16877 469 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 TYSND1Q2T9J0 566 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 FBXL19Q6PCT2 694 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 PAOXQ6QHF9 649 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 OR9I1Q8NGQ6 314 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 ASB9Q96DX5 294 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 NSMCE3Q96MG7 304 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 CINPQ9BW66 212 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-202ENST00000352886 UNC93B1Q9H1C4 597 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 SEPT3Q9UH03 358 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 SPO11Q9Y5K1 396 aa21.76■■□□□ 1.07
SHMT1-202ENST00000352886 TET1Q8NFU7 2136 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 LRRC14BA6NHZ5 514 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 SELPP16109 830 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 SCNN1BP51168 640 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 UGT3A2Q3SY77 523 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 EGFL6Q8IUX8 553 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 CLYBLQ8N0X4 340 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 LILRA2Q8N149 483 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 SLC43A3Q8NBI5 491 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 RMDN1Q96DB5 314 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 PSKH2Q96QS6 385 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 TSC22D3Q99576 134 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 UBA2Q9UBT2 640 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-202ENST00000352886 RIMKLBQ9ULI2 386 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 H7C4K7 107 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 CDK14O94921 469 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 CRTAMO95727 393 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 MTHFD2P13995 350 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 GEN1Q17RS7 908 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 ANKS3Q6ZW76 656 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 RAB44Q7Z6P3 723 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-202ENST00000352886 GBP5Q96PP8 586 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 TRAPPC9Q96Q05 1148 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 SLC25A23Q9BV35 468 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 MID1IP1Q9NPA3 183 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 NLE1Q9NVX2 485 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-202ENST00000352886 LRFN2Q9ULH4 789 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 DNAJC15Q9Y5T4 150 aa21.75■■□□□ 1.07
SHMT1-202ENST00000352886 GJB5O95377 273 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 CALRP27797 417 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PSMD8P48556 350 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 SLC11A2P49281 568 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 ZNF140P52738 457 aaPredicted RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 CDH4P55283 916 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 RPL26P61254 145 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 GPNMBQ14956 572 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PDK3Q15120 406 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 TMEM126BQ8IUX1 230 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 DENND1CQ8IV53 801 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 RHEBL1Q8TAI7 183 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 ATOH8Q96SQ7 321 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 TTPALQ9BTX7 342 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 INTS10Q9NVR2 710 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 EPS15L1Q9UBC2 864 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 SUCOQ9UBS9 1254 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 SRRDQ9UH36 339 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 FAM50BQ9Y247 325 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PRSS51A0A1B0GVH4 220 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 ENO4A6NNW6 628 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 GALTP07902 379 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 OXCT1P55809 520 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 ELAVL2Q12926 359 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 TRIM25Q14258 630 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 GLT6D1Q7Z4J2 308 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 OR4K2Q8NGD2 314 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 C2orf15Q8WU43 125 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 ZNF512Q96ME7 567 aaPredicted RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PRICKLE1Q96MT3 831 aaPredicted RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 NSUN5Q96P11 429 aaKnown RBP21.74■■□□□ 1.07
SHMT1-202ENST00000352886 ASB2Q96Q27 587 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PKP2Q99959 881 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 TTLL2Q9BWV7 592 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PCDHAC1Q9H158 963 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PIDD1Q9HB75 910 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 SARDHQ9UL12 918 aa21.74■■□□□ 1.07
SHMT1-202ENST00000352886 PTGDR2Q9Y5Y4 395 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms