RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 C2orf81A6NN90 581 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 SUPT7LO94864 414 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 ANO7Q6IWH7 933 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 CHSY3Q70JA7 882 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 DHDDSQ86SQ9 333 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 PGAM4Q8N0Y7 254 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 MDGA1Q8NFP4 955 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 STK39Q9UEW8 545 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 TRIM17Q9Y577 477 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 RAI2Q9Y5P3 530 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 UNC50Q53HI1 259 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 SPOUT1Q5T280 376 aaKnown RBP23.93■■□□□ 1.42
TRIM54-201ENST00000296098 HERC6Q8IVU3 1022 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 LPGAT1Q92604 370 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 EFCAB1Q9HAE3 211 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 PAK6Q9NQU5 681 aaPredicted RBP23.93■■□□□ 1.42
TRIM54-201ENST00000296098 TRAF6Q9Y4K3 522 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 PLXNA4Q9HCM2 1894 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 ANAPC1Q9H1A4 1944 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 UBFD1O14562 309 aaKnown RBP23.93■■□□□ 1.42
TRIM54-201ENST00000296098 RHOBTB1O94844 696 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 PDHA1P08559 390 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 HSPA1AP0DMV8 641 aaKnown RBP23.93■■□□□ 1.42
TRIM54-201ENST00000296098 HSPA1BP0DMV9 641 aaKnown RBP23.93■■□□□ 1.42
TRIM54-201ENST00000296098 PSMA3P25788 255 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 ARF5P84085 180 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 OR4D1Q15615 310 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 PTGR2Q8N8N7 351 aaPredicted RBP23.93■■□□□ 1.42
TRIM54-201ENST00000296098 RHEBL1Q8TAI7 183 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 FAM136AQ96C01 138 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 CCDC68Q9H2F9 335 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 SMPD4Q9NXE4 827 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 VPS28Q9UK41 221 aa23.93■■□□□ 1.42
TRIM54-201ENST00000296098 GBF1Q92538 1859 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 TMCC1O94876 653 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 C1RP00736 705 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 F11P03951 625 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 PPP3CCP48454 512 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 ART3Q13508 389 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 SQLEQ14534 574 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 ZNF783Q6ZMS7 281 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 ANKRD33Q7Z3H0 272 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 RAB44Q7Z6P3 723 aaPredicted RBP23.92■■□□□ 1.42
TRIM54-201ENST00000296098 HIPK4Q8NE63 616 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 TCF12Q99081 682 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 ADGRE3Q9BY15 652 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 TFB2MQ9H5Q4 396 aaKnown RBP23.92■■□□□ 1.42
TRIM54-201ENST00000296098 WDR41Q9HAD4 459 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 PCDHGC4Q9Y5F7 938 aa23.92■■□□□ 1.42
TRIM54-201ENST00000296098 H3BMM5 538 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 ENO3P13929 434 aaPredicted RBP23.91■■□□□ 1.42
TRIM54-201ENST00000296098 IKBKEQ14164 716 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 IZUMO2Q6UXV1 221 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 SYTL2Q9HCH5 934 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 TAS2R13Q9NYV9 303 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 STOML2Q9UJZ1 356 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 UBXN8O00124 270 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 UBDO15205 165 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 NDUFS3O75489 264 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 SRP72O76094 671 aaKnown RBP23.91■■□□□ 1.42
TRIM54-201ENST00000296098 MBL2P11226 248 aaPredicted RBP23.91■■□□□ 1.42
TRIM54-201ENST00000296098 TSPAN8P19075 237 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 LPOP22079 712 aaPredicted RBP23.91■■□□□ 1.42
TRIM54-201ENST00000296098 FMO4P31512 558 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 THOP1P52888 689 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 KLC1Q07866 573 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 TWF1Q12792 350 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 CLEC6AQ6EIG7 209 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 IRGCQ6NXR0 463 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 LINGO4Q6UY18 593 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 GK5Q6ZS86 529 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 ASB2Q96Q27 587 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 SMIM14Q96QK8 99 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 ATOH8Q96SQ7 321 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 CDRT15Q96T59 188 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 HERC2P3Q9BVR0 1158 aa23.91■■□□□ 1.42
TRIM54-201ENST00000296098 PRRG1O14668 218 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 SNAP91O60641 907 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 MAPRE2Q15555 327 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 PPP1R3AQ16821 1122 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 PIGGQ5H8A4 983 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 TMEM169Q96HH4 297 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 ZNF558Q96NG5 402 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 ZBED2Q9BTP6 218 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 DERL2Q9GZP9 239 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 OGDHLQ9ULD0 1010 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 VPS9D1Q9Y2B5 631 aa23.9■■□□□ 1.42
TRIM54-201ENST00000296098 CCDC189A1A4V9 331 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 H0Y626 953 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 TBL1XO60907 577 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 LATS1O95835 1130 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 ARSAP15289 507 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 MRPS35P82673 323 aaKnown RBP23.89■■□□□ 1.42
TRIM54-201ENST00000296098 SMAD3P84022 425 aaKnown RBP23.89■■□□□ 1.42
TRIM54-201ENST00000296098 TRAF2Q12933 501 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 CNKSR3Q6P9H4 555 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 KBTBD6Q86V97 674 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 CARNMT1Q8N4J0 409 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 EFHBQ8N7U6 833 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 ZFRQ96KR1 1074 aaKnown RBP23.89■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms