RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 KCTD3Q9Y597 815 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 RAD54BQ9Y620 910 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 NEMP2A6NFY4 417 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 FAM159BA6NKW6 160 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 WASH3PC4AMC7 463 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 CBX4O00257 560 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 RASSF9O75901 435 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 HLA-DQB2P05538 268 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 TCF3P15923 654 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 ACVRL1P37023 503 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 RASSF2P50749 326 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 NAGLUP54802 743 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 GALNT3Q14435 633 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PAFAH1B3Q15102 231 aaKnown RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PRKD1Q15139 912 aaPredicted RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PDCD2Q16342 344 aaPredicted RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 EOGTQ5NDL2 527 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 MZB1Q8WU39 189 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 VPS39Q96JC1 886 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SMIM14Q96QK8 99 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 NUDCD1Q96RS6 583 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 ACOX2Q99424 681 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 TBL1YQ9BQ87 522 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 FAM167BQ9BTA0 163 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 FAM124BQ9H5Z6 455 aaPredicted RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PPCSQ9HAB8 311 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SLC12A4Q9UP95 1085 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 TYW5A2RUC4 315 aaKnown RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 AURKAO14965 403 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 CHUKO15111 745 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SKAP2O75563 359 aaPredicted RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PRKCHP24723 683 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 WNT3AP56704 352 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 RPS24P62847 133 aaKnown RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PPIDQ08752 370 aaKnown RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 ZNF235Q14590 738 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 POLD3Q15054 466 aaPredicted RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 CRY1Q16526 586 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 LACTB2Q53H82 288 aaPredicted RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 EGFLAMQ63HQ2 1017 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 ICE2Q659A1 982 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 LINGO4Q6UY18 593 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SYT13Q7L8C5 426 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 KBTBD6Q86V97 674 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SNX31Q8N9S9 440 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 IL17RCQ8NAC3 791 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 SUMF1Q8NBK3 374 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 OR6K2Q8NGY2 324 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 GIMAP7Q8NHV1 300 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 UCMAQ8WVF2 138 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 IFT43Q96FT9 208 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 ARRDC1-AS1Q9H2J1 176 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 GGA2Q9UJY4 613 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 APOBEC2Q9Y235 224 aaKnown RBP8.68□□□□□ -1.02
VPS4B-201ENST00000238497 PTPRDP23468 1912 aa8.68□□□□□ -1.02
VPS4B-201ENST00000238497 BPGMP07738 259 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 MSX2P35548 267 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 SOX11P35716 441 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 SLC11A2P49281 568 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 MRPS21P82921 87 aaKnown RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 RAB41Q5JT25 222 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 RNF43Q68DV7 783 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 KLHDC10Q6PID8 442 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 TMEM92Q6UXU6 159 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 C4orf22Q6V702 233 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 FAM160A2Q8N612 972 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 RNF148Q8N7C7 305 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 PPHLN1Q8NEY8 458 aaKnown RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 OR7D4Q8NG98 312 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 SORCS1Q8WY21 1168 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 RTP4Q96DX8 246 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 RAB3IPQ96QF0 476 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 TTC1Q99614 292 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 GBA3Q9H227 469 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 WDR55Q9H6Y2 383 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 MMP17Q9ULZ9 603 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 ZNF510Q9Y2H8 683 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 DMXL1Q9Y485 3027 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 NUP210Q8TEM1 1887 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 ANKRD12Q6UB98 2062 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 KCNU1A8MYU2 1149 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 PRR5-ARHGAP8B1AHC4 643 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 HOXC11O43248 304 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 SYNCRIPO60506 623 aaKnown RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 DNAJC8O75937 253 aaPredicted RBP8.67□□□□□ -1.02
VPS4B-201ENST00000238497 SERPINB5P36952 375 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 ID4P47928 161 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 NEK3P51956 506 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 ARHGAP8P85298 464 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 SEMG2Q02383 582 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 STARD3Q14849 445 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 NAA25Q14CX7 972 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 GAB4Q2WGN9 574 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 PM20D1Q6GTS8 502 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 FBXL22Q6P050 247 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 CAMKK1Q8N5S9 505 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 ZNF366Q8N895 744 aa8.67□□□□□ -1.02
VPS4B-201ENST00000238497 MDGA1Q8NFP4 955 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms