RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ACAD9Q9H845 621 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PLEKHA2Q9HB19 425 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PDE11AQ9HCR9 933 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FGF22Q9HCT0 170 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 WDR6Q9NNW5 1121 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 ARFGAP3Q9NP61 516 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 DDX4Q9NQI0 724 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 ATP8A2Q9NTI2 1148 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 LIN7CQ9NUP9 197 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 TMLHEQ9NVH6 421 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 THAP1Q9NVV9 213 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TMEM51Q9NW97 253 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 DACT1Q9NYF0 836 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ZNF624Q9P2J8 865 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 NLKQ9UBE8 527 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FBXO40Q9UH90 709 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SLCO3A1Q9UIG8 710 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 KCND3Q9UK17 655 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 KLK13Q9UKR3 277 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP0.48□□□□□ -2.33
VPS35-212ENST00000640313 GPR52Q9Y2T5 361 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PCDHGB3Q9Y5G1 929 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SNX9Q9Y5X1 595 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 AHNAK2Q8IVF2 5795 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 A0A1W2PQM1 296 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 hDV102S1A0JD36 115 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 VWA3AA6NCI4 1184 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 OR6C68A6NDL8 312 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PABPN1LA6NDY0 278 aaKnown RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 TMEM247A6NEH6 219 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HMX3A6NHT5 357 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HSPB2A8KAH6 182 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 FAM157AC9JC47 383 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 E7EVH7 732 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 F5H423 210 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 STX16-NPEPL1H3BU86 382 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 STX16O14662 325 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SYN3O14994 580 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PIP5K1CO60331 668 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RFPL2O75678 378 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 KRT38O76015 456 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SERPINC1P01008 464 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CD48P09326 243 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 FRMD6-AS1P0C7T7 363 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DHRS4L1P0CG22 281 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CYP4B1P13584 511 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HLA-DOBP13765 273 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SRD5A1P18405 259 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 YWHAQP27348 245 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HOXC8P31273 242 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RFC1P35251 1148 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 HNF1BP35680 557 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CHKAP35790 457 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DPP6P42658 865 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PCP4P48539 62 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TRAPPC10P48553 1259 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HOXA1P49639 335 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 CCR5P51681 352 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RPS6KA3P51812 740 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 OAZ1P54368 228 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ARSFP54793 590 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CLDN2P57739 230 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ACTR2P61160 394 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ARHGAP8P85298 464 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RELQ04864 619 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 CHAF1AQ13111 956 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 CUL4BQ13620 913 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ALKBH1Q13686 389 aaKnown RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 BYSLQ13895 437 aaKnown RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 EFR3AQ14156 821 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 LPIN1Q14693 890 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HSPB2Q16082 182 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SLC18A3Q16572 532 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TIGD6Q17RP2 521 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PRICKLE4Q2TBC4 344 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CCDC38Q502W7 563 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ESCO2Q56NI9 601 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PAPPA-AS1Q5QFB9 102 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CBWD5Q5RIA9 395 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 MAP3K21Q5TCX8 1036 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 IRAK1BP1Q5VVH5 260 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HIST2H2BDQ6DRA6 164 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ANKRD54Q6NXT1 300 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DENND1BQ6P3S1 775 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PGBD2Q6P3X8 592 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 GGT6Q6P531 493 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 KLHL17Q6TDP4 642 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ATF7IPQ6VMQ6 1270 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ZNF852Q6ZMS4 543 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SYNE3Q6ZMZ3 975 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RINLQ6ZS11 566 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 MTSS1LQ765P7 747 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ATG9AQ7Z3C6 839 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 MON1AQ86VX9 555 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TTC30AQ86WT1 665 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TMC8Q8IU68 726 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CPOQ8IVL8 374 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SFTPA2Q8IWL1 248 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CHERPQ8IWX8 916 aaKnown RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms