RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GOLGA6L10A0A0M3HER8 536 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 A0A1B0GVT2 93 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 CAPN8A6NHC0 703 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 ZNF185O15231 689 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 GCATO75600 419 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 HEXIM1O94992 359 aaKnown RBP18.12■□□□□ 0.49
CLN3-239ENST00000628023 NDST3O95803 873 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 PRLP01236 227 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 HNF1BP35680 557 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 GRIK2Q13002 908 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 TRIP6Q15654 476 aaKnown RBP18.12■□□□□ 0.49
CLN3-239ENST00000628023 CNGA3Q16281 694 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 QPCTQ16769 361 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 LIPIQ6XZB0 460 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 PTAR1Q7Z6K3 402 aaPredicted RBP18.12■□□□□ 0.49
CLN3-239ENST00000628023 KDF1Q8NAX2 398 aaPredicted RBP18.12■□□□□ 0.49
CLN3-239ENST00000628023 DENND6BQ8NEG7 585 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 ACTRT1Q8TDG2 376 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 CAPZA3Q96KX2 299 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 MCCC1Q96RQ3 725 aaPredicted RBP18.12■□□□□ 0.49
CLN3-239ENST00000628023 AP1M1Q9BXS5 423 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 SMARCAL1Q9NZC9 954 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 ZMIZ1Q9ULJ6 1067 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 TTC7AQ9ULT0 858 aaPredicted RBP18.12■□□□□ 0.49
CLN3-239ENST00000628023 PPIL1Q9Y3C6 166 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 SAR1BQ9Y6B6 198 aa18.12■□□□□ 0.49
CLN3-239ENST00000628023 GOLGA8CPA6NN73 597 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 ANKRD66B4E2M5 251 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 FPGTO14772 594 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 WNT9AO14904 365 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 SH3BP5O60239 455 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 MAGEC1O60732 1142 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 CER1O95813 267 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 SLC4A1P02730 911 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 CASQ1P31415 396 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 CLDN2P57739 230 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 PTPRRQ15256 657 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 PARP6Q2NL67 630 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 HS1BP3Q53T59 392 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 LRRC66Q68CR7 880 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 DRICH1Q6PGQ1 229 aaPredicted RBP18.11■□□□□ 0.49
CLN3-239ENST00000628023 KDELC1Q6UW63 502 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 TSPAN33Q86UF1 283 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 NAXDQ8IW45 347 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 TAB3Q8N5C8 712 aaPredicted RBP18.11■□□□□ 0.49
CLN3-239ENST00000628023 SLC25A41Q8N5S1 370 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 TMEM145Q8NBT3 493 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 ASB12Q8WXK4 309 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 MAGOHBQ96A72 148 aaKnown RBP18.11■□□□□ 0.49
CLN3-239ENST00000628023 RTP4Q96DX8 246 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 MRGPRX2Q96LB1 330 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 SMIM14Q96QK8 99 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 TRIB3Q96RU7 358 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 FICDQ9BVA6 458 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 MSRB2Q9Y3D2 182 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 FRYQ5TBA9 3013 aa18.11■□□□□ 0.49
CLN3-239ENST00000628023 C1orf232A0A0U1RR37 186 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 A6NNZ2 444 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 RAD51BO15315 384 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 RECQL5O94762 991 aaPredicted RBP18.1■□□□□ 0.49
CLN3-239ENST00000628023 ZNF30P17039 623 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 LHCGRP22888 699 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 LRRC14Q15048 493 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 FAXCQ5TGI0 409 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 PAPD7Q5XG87 772 aaKnown RBP18.1■□□□□ 0.49
CLN3-239ENST00000628023 PRELID2Q8N945 189 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 MFSD2AQ8NA29 543 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 GATA6Q92908 595 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 LENG8Q96PV6 779 aaPredicted RBP18.1■□□□□ 0.49
CLN3-239ENST00000628023 DOCK9Q9BZ29 2069 aa18.1■□□□□ 0.49
CLN3-239ENST00000628023 E7EVH7 732 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 H0Y8X5 98 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 PSMD11O00231 422 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 VILLO15195 856 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 PCCBP05166 539 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 PIRTP0C851 137 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 THEGLP0DJG4 465 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 HLA-DPA1P20036 260 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 KCNJ1P48048 391 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 LMAN1P49257 510 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 ETF1P62495 437 aaKnown RBP18.09■□□□□ 0.49
CLN3-239ENST00000628023 IRF4Q15306 451 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 SLC1A5Q15758 541 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 CRTC1Q6UUV9 634 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 SYT10Q6XYQ8 523 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 GCNT7Q6ZNI0 430 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 CHCHD4Q8N4Q1 142 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 CCHCR1Q8TD31 782 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 SETD7Q8WTS6 366 aaKnown RBP18.09■□□□□ 0.49
CLN3-239ENST00000628023 NUS1Q96E22 293 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 KLHDC7BQ96G42 594 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 GORASP1Q9BQQ3 440 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 GAREM1Q9H706 876 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 PAK5Q9P286 719 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 KLK13Q9UKR3 277 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 APOBEC2Q9Y235 224 aaKnown RBP18.09■□□□□ 0.49
CLN3-239ENST00000628023 DRG1Q9Y295 367 aaKnown RBP18.09■□□□□ 0.49
CLN3-239ENST00000628023 ANKRD6Q9Y2G4 727 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 HS3ST3A1Q9Y663 406 aa18.09■□□□□ 0.49
CLN3-239ENST00000628023 CHD6Q8TD26 2715 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms