RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 TTC24A2A3L6 582 aaPredicted RBP16.36■□□□□ 0.21
LDB3-208ENST00000623007 GOLGA8OA6NCC3 632 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 HIDE1A8MVS5 230 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 GOLGA8NF8WBI6 632 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 HTRA2O43464 458 aaPredicted RBP16.36■□□□□ 0.21
LDB3-208ENST00000623007 RASSF9O75901 435 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 LMAN2Q12907 356 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 TRAF2Q12933 501 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 ZCCHC23Q6ZST2 131 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 ARHGAP24Q8N264 748 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 TMEM151AQ8N4L1 468 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 PCDH20Q8N6Y1 951 aaKnown RBP16.36■□□□□ 0.21
LDB3-208ENST00000623007 OR2AP1Q8NGE2 309 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 RHEBL1Q8TAI7 183 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 SLC22A17Q8WUG5 538 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 NSL1Q96IY1 281 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 EXOC2Q96KP1 924 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 AARSD1Q9BTE6 412 aaKnown RBP16.36■□□□□ 0.21
LDB3-208ENST00000623007 MARK1Q9P0L2 795 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 APPL1Q9UKG1 709 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 TRIM33Q9UPN9 1127 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 SLC8A2Q9UPR5 921 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 PCDHGC4Q9Y5F7 938 aa16.36■□□□□ 0.21
LDB3-208ENST00000623007 PTPN4P29074 926 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 ABCG1P45844 678 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 VASPP50552 380 aaPredicted RBP16.35■□□□□ 0.21
LDB3-208ENST00000623007 ATP6V0D1P61421 351 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 RIPK1Q13546 671 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 TECRLQ5HYJ1 363 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 LINGO4Q6UY18 593 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 MFSD6LQ8IWD5 586 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 C7orf61Q8IZ16 206 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 OR13C4Q8NGS5 318 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 NXNL1Q96CM4 212 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 SORT1Q99523 831 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 CPEB1Q9BZB8 566 aaKnown RBP16.35■□□□□ 0.21
LDB3-208ENST00000623007 CDH19Q9H159 772 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 SLC40A1Q9NP59 571 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 ZNF358Q9NW07 568 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 PCDHB1Q9Y5F3 818 aa16.35■□□□□ 0.21
LDB3-208ENST00000623007 TK2O00142 265 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 CLASP2O75122 1294 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 WISP3O95389 354 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 CCDC166P0CW27 439 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PTGER3P43115 390 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 RPL14P50914 215 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 NFKB2Q00653 900 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PFKPQ01813 784 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 CACNG1Q06432 222 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 USP4Q13107 963 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PDAP1Q13442 181 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 CSHL1Q14406 222 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 SPRED3Q2MJR0 410 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PITRM1Q5JRX3 1037 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 CBARPQ8N350 705 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 NKAPQ8N5F7 415 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 ACVR1CQ8NER5 493 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 MDGA1Q8NFP4 955 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 HEXDCQ8WVB3 486 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 ZNF641Q96N77 438 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 LYSMD1Q96S90 227 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 GATA5Q9BWX5 397 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 GPR63Q9BZJ6 419 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 LMAN2LQ9H0V9 348 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 IGSF5Q9NSI5 407 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 CPSF2Q9P2I0 782 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 FCF1Q9Y324 198 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 ZNF711Q9Y462 761 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PCDHB9Q9Y5E1 797 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 SPO11Q9Y5K1 396 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 SLC30A1Q9Y6M5 507 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 KIAA0100Q14667 2235 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 H3BMM5 538 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 FCHO1O14526 889 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 SLC22A2O15244 555 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 SMIM24O75264 130 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 VPS26AO75436 327 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 IPO13O94829 963 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 PAPLNO95428 1278 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 ESR1P03372 595 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PDHA1P08559 390 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 TPBGLP0DKB5 382 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 EN2P19622 333 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 ADSLP30566 484 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 TEAD2Q15562 447 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 CTC1Q2NKJ3 1217 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 RBM20Q5T481 1227 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 TPGS1Q6ZTW0 290 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 RAB44Q7Z6P3 723 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 APCDD1Q8J025 514 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 TTC30BQ8N4P2 665 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 PAF1Q8N7H5 531 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 IRF7Q92985 503 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 OLFM1Q99784 485 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 C20orf27Q9GZN8 174 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 MMADHCQ9H3L0 296 aaPredicted RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 TFB2MQ9H5Q4 396 aaKnown RBP16.34■□□□□ 0.21
LDB3-208ENST00000623007 SPHK2Q9NRA0 654 aa16.34■□□□□ 0.21
LDB3-208ENST00000623007 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.34■□□□□ 0.21
LDB3-208ENST00000623007 KCTD3Q9Y597 815 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms