RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SORDQ00796 357 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 EEF1A2Q05639 463 aaKnown RBP5.3□□□□□ -1.56
NUP88-213ENST00000576862 COASYQ13057 564 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 OASLQ15646 514 aaKnown RBP5.3□□□□□ -1.56
NUP88-213ENST00000576862 C18orf65Q6ZTR6 163 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 SMRP1Q8NCR6 262 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 PSPC1Q8WXF1 523 aaKnown RBP5.3□□□□□ -1.56
NUP88-213ENST00000576862 ADGRG7Q96K78 797 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 PIP5K1AQ99755 562 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 MMP25Q9NPA2 562 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 CNGB3Q9NQW8 809 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 WWOXQ9NZC7 414 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 CEPT1Q9Y6K0 416 aa5.3□□□□□ -1.56
NUP88-213ENST00000576862 ATXN2Q99700 1313 aaKnown RBP5.29□□□□□ -1.56
NUP88-213ENST00000576862 CUX1P39880 1505 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 J3KRW8 73 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 PMS2P2O95744 297 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 DAOP14920 347 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 ELF1P32519 619 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 PEX5P50542 639 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 METAP2P50579 478 aaKnown RBP eCLIP5.29□□□□□ -1.56
NUP88-213ENST00000576862 ECT2LQ008S8 904 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 ZNF155Q12901 538 aaPredicted RBP5.29□□□□□ -1.56
NUP88-213ENST00000576862 TBX2Q13207 712 aaPredicted RBP5.29□□□□□ -1.56
NUP88-213ENST00000576862 SNTA1Q13424 505 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 NAE1Q13564 534 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 SLC39A14Q15043 492 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 CALCRLQ16602 461 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 SLC45A4Q5BKX6 768 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 CDC73Q6P1J9 531 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 WDR63Q8IWG1 891 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 SPATA6LQ8N4H0 392 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 SPATA22Q8NHS9 363 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 KCNG4Q8TDN1 519 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 PPP1R13BQ96KQ4 1090 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 C1QTNF5Q9BXJ0 243 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 SLC26A6Q9BXS9 759 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 PRKRIP1Q9H875 184 aaPredicted RBP5.29□□□□□ -1.56
NUP88-213ENST00000576862 C17orf75Q9HAS0 396 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 SCPEP1Q9HB40 452 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 GPR108Q9NPR9 543 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 ASAH2Q9NR71 780 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 C1RLQ9NZP8 487 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 ABI3Q9P2A4 366 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 NESP48681 1621 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 EEA1Q15075 1411 aa5.29□□□□□ -1.56
NUP88-213ENST00000576862 FANCD2Q9BXW9 1451 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 PLSCR5A0PG75 271 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 EME2A4GXA9 379 aaPredicted RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 TTC36A6NLP5 189 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 PRSS44E7EML9 344 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 LINC00271P0C7V0 271 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 SRCP12931 536 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 DDIT3P35638 169 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 PIP4K2AP48426 406 aaPredicted RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 CCR9P51686 369 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 RRP1P56182 461 aaKnown RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 MPP1Q00013 466 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 FOXD4Q12950 439 aaPredicted RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 TSTQ16762 297 aaKnown RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 ATP13A5Q4VNC0 1218 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 WDR73Q6P4I2 378 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 SPSB3Q6PJ21 355 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 ATF7IPQ6VMQ6 1270 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 TAOK1Q7L7X3 1001 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 CHERPQ8IWX8 916 aaKnown RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 WFIKKN2Q8TEU8 576 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 GTF3C6Q969F1 213 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 EVI5LQ96CN4 794 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 PERPQ96FX8 193 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 C3orf30Q96M34 536 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 PPP1R3EQ9H7J1 279 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 ZNF556Q9HAH1 456 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 HINT3Q9NQE9 182 aaKnown RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 SMARCAL1Q9NZC9 954 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 MALT1Q9UDY8 824 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 HAO1Q9UJM8 370 aa5.28□□□□□ -1.56
NUP88-213ENST00000576862 AAR2Q9Y312 384 aaKnown RBP5.28□□□□□ -1.56
NUP88-213ENST00000576862 TOP2BQ02880 1626 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 HMGB1P1B2RPK0 211 aaPredicted RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 MID1O15344 667 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 SLC16A5O15375 505 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 SEC14L2O76054 403 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 RTN3O95197 1032 aaPredicted RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 PTMSP20962 102 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 RAD23BP54727 409 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 RPL7AP62424 266 aaKnown RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 TMEM115Q12893 351 aaPredicted RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 ILF3Q12906 894 aaKnown RBP eCLIP5.27□□□□□ -1.57
NUP88-213ENST00000576862 DCTN2Q13561 401 aaKnown RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 DRAP1Q14919 205 aaPredicted RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 CXorf66Q5JRM2 361 aaPredicted RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 C6orf141Q5SZD1 244 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 CCDC70Q6NSX1 233 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 DIS3L2Q8IYB7 885 aaKnown RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 TANKQ92844 425 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 MTBPQ96DY7 904 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 BICD1Q96G01 975 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 LMLNQ96KR4 655 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 DUX5Q96PT3 197 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms