RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TGFB3P10600 412 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 STX2P32856 288 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 BSGP35613 385 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 METAP2P50579 478 aaKnown RBP eCLIP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 RARSP54136 660 aaKnown RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 RAD23BP54727 409 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 TMEM115Q12893 351 aaPredicted RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 DLG1Q12959 904 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 SNTA1Q13424 505 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 DCTN2Q13561 401 aaKnown RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 CALCRLQ16602 461 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 IZUMO4Q1ZYL8 232 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 USP41Q3LFD5 358 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 KLHL22Q53GT1 634 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 C6orf141Q5SZD1 244 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 PQLC2Q6ZP29 291 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 HAPLN4Q86UW8 402 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 WDR63Q8IWG1 891 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 DIS3L2Q8IYB7 885 aaKnown RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 DSELQ8IZU8 1212 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 KCNG4Q8TDN1 519 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 RND1Q92730 232 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 INTS12Q96CB8 462 aaKnown RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 PPP1R3EQ9H7J1 279 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 DDX31Q9H8H2 851 aaKnown RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 KIF9Q9HAQ2 790 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 MMP25Q9NPA2 562 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 HINT3Q9NQE9 182 aaKnown RBP4.6□□□□□ -1.67
SCFD1-221ENST00000556534 HAO1Q9UJM8 370 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 ERVK-11Q9UQG0 969 aa4.6□□□□□ -1.67
SCFD1-221ENST00000556534 A0A1B0GUV1 79 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 SMTNL1A8MU46 457 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 CLDN14O95500 239 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 DAOP14920 347 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 DDX5P17844 614 aaKnown RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 PBX3P40426 434 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 CEBPZQ03701 1054 aaKnown RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 COASYQ13057 564 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 DRAP1Q14919 205 aaPredicted RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 SLC45A4Q5BKX6 768 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 WDR73Q6P4I2 378 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 TAOK1Q7L7X3 1001 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 BHLHA9Q7RTU4 235 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 CHERPQ8IWX8 916 aaKnown RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 SPATA6LQ8N4H0 392 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 RBMXL3Q8N7X1 1067 aaKnown RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 OR2AK2Q8NG84 335 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 TDRD7Q8NHU6 1098 aaKnown RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 ETNPPLQ8TBG4 499 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 NEK9Q8TD19 979 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 MTBPQ96DY7 904 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 OR1F2PQ96R84 312 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 TMEM47Q9BQJ4 181 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 C1QTNF4Q9BXJ3 329 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 IFIH1Q9BYX4 1025 aaKnown RBP4.59□□□□□ -1.67
SCFD1-221ENST00000556534 GPR108Q9NPR9 543 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 ZNF224Q9NZL3 707 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 PROCRQ9UNN8 238 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 SNX9Q9Y5X1 595 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 CEPT1Q9Y6K0 416 aa4.59□□□□□ -1.67
SCFD1-221ENST00000556534 ATXN2Q99700 1313 aaKnown RBP4.58□□□□□ -1.68
SCFD1-221ENST00000556534 A0A1W2PRG0 241 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 PLSCR5A0PG75 271 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 VCYO14598 125 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 SLC16A5O15375 505 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 EPB41L2O43491 1005 aaKnown RBP4.58□□□□□ -1.68
SCFD1-221ENST00000556534 RFPL2O75678 378 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 MBD4O95243 580 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 PMS2P2O95744 297 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 PEX5P50542 639 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 SEC61BP60468 96 aaKnown RBP4.58□□□□□ -1.68
SCFD1-221ENST00000556534 OLIG2Q13516 323 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 SF3B4Q15427 424 aaKnown RBP eCLIP4.58□□□□□ -1.684e-7■■□□□ 13.4
SCFD1-221ENST00000556534 CCNG2Q16589 344 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 KIF19Q2TAC6 998 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 TSSK4Q6SA08 328 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 C18orf65Q6ZTR6 163 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 TMTC3Q6ZXV5 915 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 TMEM116Q8NCL8 245 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 WFIKKN2Q8TEU8 576 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 FAM149B1Q96BN6 582 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 MMABQ96EY8 250 aaPredicted RBP4.58□□□□□ -1.68
SCFD1-221ENST00000556534 BICD1Q96G01 975 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 MPP4Q96JB8 637 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF385AQ96PM9 386 aaKnown RBP4.58□□□□□ -1.68
SCFD1-221ENST00000556534 SH3GL2Q99962 352 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 KXD1Q9BQD3 176 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 NDST4Q9H3R1 872 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 SMARCAL1Q9NZC9 954 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 SIX4Q9UIU6 781 aa4.58□□□□□ -1.68
SCFD1-221ENST00000556534 MID1O15344 667 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 DDNO94850 711 aaPredicted RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 SRCP12931 536 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 IL7RP16871 459 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 F2RL1P55085 397 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 RRP1P56182 461 aaKnown RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 RPS3AP61247 264 aaKnown RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF155Q12901 538 aaPredicted RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 TNFAIP1Q13829 316 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 SLC39A14Q15043 492 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms