RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 TMEM184BQ9Y519 407 aaPredicted RBP12.93□□□□□ -0.34
VPS29-211ENST00000553128 KCTD3Q9Y597 815 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 PRRC2CQ9Y520 2896 aaKnown RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 TRBV23OR9-2A0A075B6M9 112 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 PPP1R3GB7ZBB8 358 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 MKRN2OSH3BPM6 223 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 FOXN3O00409 490 aaPredicted RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 DNAJB5O75953 348 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 KELP23276 732 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 TNFRSF8P28908 595 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 RGRP47804 291 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 POLD2P49005 469 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 MARSP56192 900 aaKnown RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 STX17P56962 302 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 SNX16P57768 344 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 CTBSQ01459 385 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 MC1RQ01726 317 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 NRG1Q02297 640 aaPredicted RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 PTK2Q05397 1052 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 ILF3Q12906 894 aaKnown RBP eCLIP12.92□□□□□ -0.34
VPS29-211ENST00000553128 BIRC2Q13490 618 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 ERV3-1Q14264 604 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 CDO1Q16878 200 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 EIF2S3LQ2VIR3 472 aaKnown RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 CRTC2Q53ET0 693 aaPredicted RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 PRR30Q53SZ7 412 aaPredicted RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 INO80DQ53TQ3 878 aaPredicted RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 TICAM1Q8IUC6 712 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 FAM114A1Q8IWE2 563 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 SRRM1Q8IYB3 904 aaKnown RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 CCDC185Q8N715 623 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 EFCAB3Q8N7B9 438 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 HCAR2Q8TDS4 363 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 SMARCE1Q969G3 411 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 C18orf8Q96DM3 657 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 TEFMQ96QE5 360 aaKnown RBP12.92□□□□□ -0.34
VPS29-211ENST00000553128 EFHD1Q9BUP0 239 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 GSDMCQ9BYG8 508 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 CASS4Q9NQ75 786 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 APEX2Q9UBZ4 518 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 SUFUQ9UMX1 484 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 CTNND2Q9UQB3 1225 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 RPS6KL1Q9Y6S9 549 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 CSMD2Q7Z408 3487 aa12.92□□□□□ -0.34
VPS29-211ENST00000553128 MED13Q9UHV7 2174 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 ZSCAN5CA6NGD5 496 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 PLEKP08567 350 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 ELFN1P0C7U0 828 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 MYCLP1P12525 358 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 ZNF28P17035 718 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 CDH5P33151 784 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 SCNN1AP37088 669 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 MRPL49Q13405 166 aaKnown RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 TSR1Q2NL82 804 aaKnown RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 NADK2Q4G0N4 442 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 BRAT1Q6PJG6 821 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 CEACAM20Q6UY09 585 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 MAMDC2Q7Z304 686 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 ARHGAP22Q7Z5H3 698 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 DNAAF5Q86Y56 855 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 PYROXD2Q8N2H3 581 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 CASKIN2Q8WXE0 1202 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 SNX21Q969T3 373 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 TBC1D31Q96DN5 1066 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 NSMCE3Q96MG7 304 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 TRIM55Q9BYV6 548 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 FRMD8Q9BZ67 464 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 ZMYND15Q9H091 742 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 SIX2Q9NPC8 291 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 CUEDC1Q9NWM3 386 aaPredicted RBP12.91□□□□□ -0.34
VPS29-211ENST00000553128 MAN1B1Q9UKM7 699 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 SHANK1Q9Y566 2161 aa12.91□□□□□ -0.34
VPS29-211ENST00000553128 RP1L1Q8IWN7 2480 aaPredicted RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 RASA4BC9J798 803 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 ZW10O43264 779 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 RASA4O43374 803 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 RFPL1O75677 317 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 SMC2O95347 1197 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 HSP90AA1P07900 732 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 DLSTP36957 453 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 COPB1P53618 953 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 STIM1Q13586 685 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 CCDC14Q49A88 953 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 TAF3Q5VWG9 929 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 AFMIDQ63HM1 303 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 TMEM35BQ8NCS4 154 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 TCTN2Q96GX1 697 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 ZNF641Q96N77 438 aaPredicted RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 ZNF768Q9H5H4 540 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 FBXO8Q9NRD0 319 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 METTL5Q9NRN9 209 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 TRNAU1APQ9NX07 287 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 CROTQ9UKG9 612 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 MAP4K5Q9Y4K4 846 aa12.9□□□□□ -0.34
VPS29-211ENST00000553128 ZNF106Q9H2Y7 1883 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 TNRC6AQ8NDV7 1962 aaKnown RBP12.9□□□□□ -0.34
VPS29-211ENST00000553128 ZFHX3Q15911 3703 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 CFAP69A5D8W1 941 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 J3KR12 359 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 EML2O95834 649 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms