RNA–Protein interactions for RNA: ENST00000550160.5

CNOT2-223, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 5

Gene CNOT2, Length 993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-223	ENST00000550160	ZNF140	P52738	457 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	COPA	P53621	1224 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	GPX6	P59796	221 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	MGAT5	Q09328	741 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	NAB1	Q13506	487 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	UAP1	Q16222	522 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	LRRC66	Q68CR7	880 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CRTC1	Q6UUV9	634 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CES3	Q6UWW8	571 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	USP30	Q70CQ3	517 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	DPPA4	Q7L190	304 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CACUL1	Q86Y37	369 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	LMNTD2	Q8IXW0	634 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	TTC30B	Q8N4P2	665 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	HDDC3	Q8N4P3	179 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	FLCN	Q8NFG4	579 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	MDGA1	Q8NFP4	955 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	TSTD1	Q8NFU3	115 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	OR4K2	Q8NGD2	314 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CLDN23	Q96B33	292 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	MFSD3	Q96ES6	412 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CERS2	Q96G23	380 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	DNAJC1	Q96KC8	554 aa	Known RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	FAM167B	Q9BTA0	163 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	MKRN2	Q9H000	416 aa	Known RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CDH19	Q9H159	772 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	CHRD	Q9H2X0	955 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	VIPAS39	Q9H9C1	493 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	TREX1	Q9NSU2	369 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	NLE1	Q9NVX2	485 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	NSMCE4A	Q9NXX6	385 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	PKD2L2	Q9NZM6	624 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	ZFAT	Q9P243	1243 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	TXNDC16	Q9P2K2	825 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	SIT1	Q9Y3P8	196 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	IKBKG	Q9Y6K9	419 aa		11.63	□□□□□ -0.55
CNOT2-223	ENST00000550160	ANKRD36	A6QL64	1941 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CKAP5	Q14008	2032 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	TCF20	Q9UGU0	1960 aa	Known RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ZCWPW2	A0A1B0GU75	182 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160		A0A1W2PP55	124 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	GOLGA6L10	A6NI86	522 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	PFDN6	O15212	129 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ATP8B1	O43520	1251 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	DCX	O43602	365 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	TSPAN6	O43657	245 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	AP1G1	O43747	822 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	RNASEH2A	O75792	299 aa	Known RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	VAPB	O95292	243 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CLDN7	O95471	211 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ELFN1	P0C7U0	828 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	METAP1	P53582	386 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	PTPN5	P54829	565 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ACVR1	Q04771	509 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CNTN1	Q12860	1018 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CNGA3	Q16281	694 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	LRRC73	Q5JTD7	316 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ESRP1	Q6NXG1	681 aa	Known RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	AFTPH	Q6ULP2	937 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	LRIG3	Q6UXM1	1119 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	TRIM67	Q6ZTA4	783 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	KCNMB4	Q86W47	210 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	RASSF3	Q86WH2	238 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CTAGE3P	Q8IX95	158 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	RAVER1	Q8IY67	606 aa	Known RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	PGBD3	Q8N328	593 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	SPEM1	Q8N4L4	309 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	OTUD6B	Q8N6M0	293 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	OR6P1	Q8NGX9	317 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	UHMK1	Q8TAS1	419 aa	Known RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CXorf40A	Q8TE69	158 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	FBF1	Q8TES7	1133 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	HMGB4	Q8WW32	186 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	EDA	Q92838	391 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	11.62	□□□□□ -0.55	5e-11	■■■■■ 94.1
CNOT2-223	ENST00000550160	MRGPRX1	Q96LB2	322 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ZNF778	Q96MU6	729 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	UHRF1	Q96T88	793 aa	Predicted RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	FUT8	Q9BYC5	575 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	ACSS3	Q9H6R3	686 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	CD320	Q9NPF0	282 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	FBXL12	Q9NXK8	326 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	MOCS1	Q9NZB8	636 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	IL17C	Q9P0M4	197 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	APPL1	Q9UKG1	709 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	FZD4	Q9ULV1	537 aa		11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	MTF2	Q9Y483	593 aa	Predicted RBP	11.62	□□□□□ -0.55
CNOT2-223	ENST00000550160	SZT2	Q5T011	3432 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	RGSL1	A5PLK6	1076 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160		A8MX80	341 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	AURKA	O14965	403 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	AREL1	O15033	823 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	BUD23	O43709	281 aa	Known RBP	11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	INHBA	P08476	426 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	GABRG2	P18507	467 aa		11.61	□□□□□ -0.55
CNOT2-223	ENST00000550160	NDUFV2	P19404	249 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms