RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 H2AFJQ9BTM1 129 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 FBXO5Q9UKT4 447 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 FAM50BQ9Y247 325 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 CROCCQ5TZA2 2017 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 TAF6P49848 677 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 LRRC74AQ0VAA2 488 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 NAA50Q9GZZ1 169 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 GDAP2Q9NXN4 497 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 LSM7Q9UK45 103 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 TIMM22Q9Y584 194 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 EFCAB10A6NFE3 127 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 FAM189A1O60320 539 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 SLC13A2Q13183 592 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 TMEM132BQ14DG7 1078 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 GCNT7Q6ZNI0 430 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 HIPK1Q86Z02 1210 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 ACOX2Q99424 681 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 SMAD5Q99717 465 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 APOL4Q9BPW4 351 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 OXSMQ9NWU1 459 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 SYNPO2Q9UMS6 1093 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 PCDHGB5Q9Y5G0 923 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 KRBA1A5PL33 1030 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 RRN3P2A6NIE6 340 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 NPM3O75607 178 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 PGLSO95336 258 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 SNAP29O95721 258 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 SMIM18P0DKX4 95 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 GEMP55040 296 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 FKBP1AP62942 108 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 CSTF3Q12996 717 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 ANKS6Q68DC2 871 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 C11orf74Q86VG3 221 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 SLC2A14Q8TDB8 520 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 COPS5Q92905 334 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 HOPXQ9BPY8 73 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 TPK1Q9H3S4 243 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 ZNF556Q9HAH1 456 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 FBRSL1Q9HCM7 1045 aaKnown RBP14.25□□□□□ -0.13
LIMS1-215ENST00000544547 ARHGEF4Q9NR80 690 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 ZNF541Q9H0D2 1346 aa14.25□□□□□ -0.13
LIMS1-215ENST00000544547 PRRG1O14668 218 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 NRP1O14786 923 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ANGPTL1O95841 491 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 IFI30P13284 250 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ERCC2P18074 760 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 KLHL17Q6TDP4 642 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 RRM2BQ7LG56 351 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 PIWIL3Q7Z3Z3 882 aaKnown RBP14.24□□□□□ -0.13
LIMS1-215ENST00000544547 RDH11Q8TC12 318 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ENKURQ8TC29 256 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 METTL6Q8TCB7 284 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 HBEGFQ99075 208 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 TMEM161AQ9NX61 479 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 KRT87PA6NCN2 255 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 H3BMQ9 156 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 YBX3P16989 372 aaKnown RBP eCLIP14.24□□□□□ -0.133e-7■■□□□ 13.4
LIMS1-215ENST00000544547 CCR1P32246 355 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 SERPINH1P50454 418 aaKnown RBP14.24□□□□□ -0.13
LIMS1-215ENST00000544547 PTPRJQ12913 1337 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 NFATC3Q12968 1075 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 TAB1Q15750 504 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 SYT16Q17RD7 645 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 TEX44Q53QW1 395 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 PDZK1Q5T2W1 519 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 PPP1R26Q5T8A7 1209 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-215ENST00000544547 SLC2A7Q6PXP3 512 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ABHD15Q6UXT9 468 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 LDB1Q86U70 411 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ADHFE1Q8IWW8 467 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 MCOLN3Q8TDD5 553 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 COG8Q96MW5 612 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ELOVL4Q9GZR5 314 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 UBQLN1Q9UMX0 589 aaKnown RBP14.24□□□□□ -0.13
LIMS1-215ENST00000544547 PKP3Q9Y446 797 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 LOC110117498-PIK3R3F6TDL0 507 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 GAS2O43903 313 aaKnown RBP14.24□□□□□ -0.13
LIMS1-215ENST00000544547 NMBRP28336 390 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 SMU1Q2TAY7 513 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ERMP1Q7Z2K6 904 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 NCSTNQ92542 709 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 C19orf60Q96EN9 201 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 MUS81Q96NY9 551 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 GIMAP2Q9UG22 337 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 PADI4Q9UM07 663 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 INVSQ9Y283 1065 aa14.24□□□□□ -0.13
LIMS1-215ENST00000544547 ACKR2O00590 384 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 DCP1BQ8IZD4 617 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 CLYBLQ8N0X4 340 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 LILRA2Q8N149 483 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 NT5MQ9NPB1 228 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 SETD4Q9NVD3 440 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ZMYM5Q9UJ78 669 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 KLHL20Q9Y2M5 609 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 MFHAS1Q9Y4C4 1052 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 SPEF1Q9Y4P9 236 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 IRS2Q9Y4H2 1338 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 FAM25AB3EWG3 89 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 FAM25CB3EWG5 89 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 FAM25GB3EWG6 89 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms