RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 EXT2Q93063 718 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 CROTQ9UKG9 612 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 AP4S1Q9Y587 144 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 PLXNA3P51805 1871 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 SMIM31A0A1B0GVY4 71 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 SYN3O14994 580 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 RPP40O75818 363 aaKnown RBP17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 STAMBPO95630 424 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 CAPNS1P04632 268 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 C8BP07358 591 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 MAPKAPK2P49137 400 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 ACADVLP49748 655 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 CLCN2P51788 898 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 TRIM71Q2Q1W2 868 aaKnown RBP17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 CIR1Q86X95 450 aaPredicted RBP17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 GALNT4Q8N4A0 578 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 TMEM102Q8N9M5 508 aaPredicted RBP17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 ATAD1Q8NBU5 361 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 ATP6V1E2Q96A05 226 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 PTERQ96BW5 349 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 DNAJC1Q96KC8 554 aaKnown RBP17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 PCDHAC1Q9H158 963 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 POPDC3Q9HBV1 291 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 CNOT11Q9UKZ1 510 aaKnown RBP17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 ARL5AQ9Y689 179 aa17.95■□□□□ 0.46
CCHCR1-228ENST00000509552 ATP6AP2A0A1C7CYW4 349 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 FAM92AA1XBS5 289 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 TRIM24O15164 1050 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 ATP6AP2O75787 350 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 RNASEH2AO75792 299 aaKnown RBP17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 EPOP01588 193 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 GRIA2P42262 883 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 RHDQ02161 417 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 BTG3Q14201 252 aaPredicted RBP17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 GEN1Q17RS7 908 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 EML3Q32P44 896 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 CLLU1OSQ5K130 101 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 SAMD4BQ5PRF9 694 aaKnown RBP17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 IL23RQ5VWK5 629 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 HACD2Q6Y1H2 254 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 KLHDC9Q8NEP7 349 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 BRSK1Q8TDC3 778 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 EME1Q96AY2 570 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 CNBD2Q96M20 576 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 CATSPERZQ9NTU4 200 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 GABRQQ9UN88 632 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 PRAMEF11O60813 436 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 MT-CO1P00395 513 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 HDCP19113 662 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 ACVRL1P37023 503 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 TRIM32Q13049 653 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 MAP7D1Q3KQU3 841 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 ZNF549Q6P9A3 640 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 RTN4RL1Q86UN2 441 aaPredicted RBP17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 PTGR2Q8N8N7 351 aaPredicted RBP17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 PCYOX1LQ8NBM8 494 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 LPGAT1Q92604 370 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 SLC4A7Q9Y6M7 1214 aa17.94■□□□□ 0.46
CCHCR1-228ENST00000509552 CCDC162PA2VCL2 907 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 TNFAIP8O95379 198 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 SERPINF2P08697 491 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 FLT3LGP49771 235 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 CDH13P55290 713 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 TAF10Q12962 218 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 GALNT3Q14435 633 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 KIF19Q2TAC6 998 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 RGMBQ6NW40 437 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 BBS5Q8N3I7 341 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 TTC9BQ8N6N2 239 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 PCSK9Q8NBP7 692 aaKnown RBP17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 OR4L1Q8NH43 312 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 RHEBL1Q8TAI7 183 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 VCX3AQ9NNX9 186 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 UBAP1Q9NZ09 502 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 MTF2Q9Y483 593 aaPredicted RBP17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 PRORSD1PA6NEY8 169 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 HSPA8P11142 646 aaKnown RBP17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 ZNF37AP17032 561 aaPredicted RBP17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 OGNP20774 298 aaKnown RBP17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 ARPP19P56211 112 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 RALGDSQ12967 914 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 MTA1Q13330 715 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 LAYNQ6UX15 382 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 AHI1Q8N157 1196 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 OR13C4Q8NGS5 318 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 SH3RF2Q8TEC5 729 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 NCSTNQ92542 709 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 PBXIP1Q96AQ6 731 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 ROPN1LQ96C74 230 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 TMEM181Q9P2C4 612 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 RIMKLBQ9ULI2 386 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 COMMD3-BMI1R4GMX3 469 aa17.93■□□□□ 0.46
CCHCR1-228ENST00000509552 OR6C75A6NL08 312 aa17.92■□□□□ 0.46
CCHCR1-228ENST00000509552 BBIP1A8MTZ0 92 aa17.92■□□□□ 0.46
CCHCR1-228ENST00000509552 GJB3O75712 270 aa17.92■□□□□ 0.46
CCHCR1-228ENST00000509552 CLPTM1O96005 669 aa17.92■□□□□ 0.46
CCHCR1-228ENST00000509552 IGLV3-27P01718 113 aa17.92■□□□□ 0.46
CCHCR1-228ENST00000509552 FGF4P08620 206 aa17.92■□□□□ 0.46
CCHCR1-228ENST00000509552 SUOXP51687 545 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms