RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MTF2Q9Y483 593 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 GPC6Q9Y625 555 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 PDZK1P1A8MUH7 402 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 CCL22O00626 93 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 DNAJC14Q6Y2X3 702 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 CLEC20AQ6ZU45 233 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ZDHHC14Q8IZN3 488 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ATG16L2Q8NAA4 619 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ITFG1Q8TB96 612 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 GATA6Q92908 595 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 IMPAD1Q9NX62 359 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 NAV1Q8NEY1 1877 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 EVPLLA8MZ36 301 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 BOLA2-SMG1P6H3BVE0 249 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 AIF1P55008 147 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 CDK18Q07002 472 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 TRAF3Q13114 568 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 PTPRNQ16849 979 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 FAM187BQ17R55 369 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 USP41Q3LFD5 358 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 LSM12Q3MHD2 195 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 TTC23Q5W5X9 447 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 PIWIL4Q7Z3Z4 852 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 TMEM110Q86TL2 294 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 TMEM130Q8N3G9 435 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF558Q96NG5 402 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 ADAM28Q9UKQ2 775 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 WDR37Q9Y2I8 494 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 CDH13P55290 713 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 MYBPC3Q14896 1274 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 CACHD1Q5VU97 1274 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 POTEHQ6S545 545 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 TAGAPQ8N103 731 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 PTGR2Q8N8N7 351 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 FNDC5Q8NAU1 212 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 TTPALQ9BTX7 342 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 RERGLQ9H628 205 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 ZMYM5Q9UJ78 669 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 CXorf49A8MYA2 514 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF682O95780 498 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 AOC1P19801 751 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 PAGE2BQ5JRK9 111 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 OR6K2Q8NGY2 324 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 AZIN2Q96A70 460 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 GATA5Q9BWX5 397 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 GIN1Q9NXP7 522 aa16.32■□□□□ 0.2
CCDC88B-209ENST00000494080 J3QRK9 145 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 TRIM24O15164 1050 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 GCATO75600 419 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 MT-ND1P03886 318 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 AMHP03971 560 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 MLNP12872 115 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 WARSP23381 471 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 HALP42357 657 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SKIV2LQ15477 1246 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PDCD4Q53EL6 469 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 C6orf183Q5T699 404 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 XKR5Q6UX68 686 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 HFE2Q6ZVN8 426 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 LDB1Q86U70 411 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PHTF2Q8N3S3 785 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 HTRA1Q92743 480 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 FBXL8Q96CD0 374 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PIWIL1Q96J94 861 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 TIAM2Q8IVF5 1701 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 CACNA1SQ13698 1873 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 FAM20BO75063 409 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC2A4P14672 509 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ATP5F1P24539 256 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SOX6P35712 828 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PBX3P40426 434 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF276Q8N554 614 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 C2orf49Q9BVC5 232 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 STRA6Q9BX79 667 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 HAPLN2Q9GZV7 340 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PCDHAC1Q9H158 963 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 C1orf21Q9H246 121 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ELOVL6Q9H5J4 265 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 TRIM39Q9HCM9 518 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 MRPL17Q9NRX2 175 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PCDHB9Q9Y5E1 797 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 MAP1BP46821 2468 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 CCDC154A6NI56 674 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 NRP2O60462 931 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 UGT1A6P19224 532 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 UGT1A1P22309 533 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 UGT1A4P22310 534 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 UGT1A3P35503 534 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 UGT1A5P35504 534 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC25A11Q02978 314 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 BNIP3Q12983 259 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 DPYSL2Q16555 572 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SPANXN2Q5MJ10 180 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF467Q7Z7K2 595 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 LRRC49Q8IUZ0 686 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 FAM126BQ8IXS8 530 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 DBF4BQ8NFT6 615 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SPPL2BQ8TCT7 592 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 EMILIN2Q9BXX0 1053 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms