RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SFR1Q86XK3 245 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 HUS1BQ8NHY5 278 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 DUSP19Q8WTR2 217 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 SLC20A1Q8WUM9 679 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 APOPT1Q96IL0 206 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 KLHL15Q96M94 604 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 PGLYRP2Q96PD5 576 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 ERRFI1Q9UJM3 462 aaPredicted RBP3.88□□□□□ -1.79
VPS41-213ENST00000485955 TAF4O00268 1085 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 LDLRAD4O15165 306 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 TIPRLO75663 272 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 IFIT1P09914 478 aaKnown RBP3.87□□□□□ -1.79
VPS41-213ENST00000485955 COX7A2P14406 83 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 KCNA5P22460 613 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 TLE2Q04725 743 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 RELQ04864 619 aaPredicted RBP3.87□□□□□ -1.79
VPS41-213ENST00000485955 GALNT2Q10471 571 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 SLC45A4Q5BKX6 768 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 LCE1EQ5T753 118 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 GFRALQ6UXV0 394 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 CCNI2Q6ZMN8 369 aaPredicted RBP3.87□□□□□ -1.79
VPS41-213ENST00000485955 SLC9B2Q86UD5 537 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 TMEM219Q86XT9 240 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 DCUN1D3Q8IWE4 304 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 SPATA6LQ8N4H0 392 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 LMNTD1Q8N9Z9 388 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 OR2AK2Q8NG84 335 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 ZCCHC10Q8TBK6 192 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 ABTB1Q969K4 478 aaPredicted RBP3.87□□□□□ -1.79
VPS41-213ENST00000485955 HVCN1Q96D96 273 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 FEM1CQ96JP0 617 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 SCLT1Q96NL6 688 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 EPYCQ99645 322 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 MMP28Q9H239 520 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 PCDH9Q9HC56 1237 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 MMP25Q9NPA2 562 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 GPR108Q9NPR9 543 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 RRN3Q9NYV6 651 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 LUZP4Q9P127 313 aa3.87□□□□□ -1.79
VPS41-213ENST00000485955 PRSS47A8MTI9 375 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 SEC14L5O43304 696 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 SEC31AO94979 1220 aaKnown RBP3.86□□□□□ -1.79
VPS41-213ENST00000485955 CRYAAP02489 173 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 CDH1P12830 882 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 MAOAP21397 527 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 MCM3P25205 808 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 METAP2P50579 478 aaKnown RBP eCLIP3.86□□□□□ -1.79
VPS41-213ENST00000485955 CLCN3P51790 818 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 SEC61BP60468 96 aaKnown RBP3.86□□□□□ -1.79
VPS41-213ENST00000485955 RPP30P78346 268 aaKnown RBP3.86□□□□□ -1.79
VPS41-213ENST00000485955 SORDQ00796 357 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 CTF1Q16619 201 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 PRICKLE4Q2TBC4 344 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 OTUD3Q5T2D3 398 aaPredicted RBP3.86□□□□□ -1.79
VPS41-213ENST00000485955 FAM122CQ6P4D5 195 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 ZNF449Q6P9G9 518 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 GDPD4Q6W3E5 623 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 KRBA2Q6ZNG9 492 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 QSOX2Q6ZRP7 698 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 MARK2Q7KZI7 788 aaKnown RBP3.86□□□□□ -1.79
VPS41-213ENST00000485955 HAPLN4Q86UW8 402 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 WDR63Q8IWG1 891 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 DSELQ8IZU8 1212 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 IL17RCQ8NAC3 791 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 BBS10Q8TAM1 723 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 PCYT2Q99447 389 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 ZFP57Q9NU63 452 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 TMEM30AQ9NV96 361 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 SAGE1Q9NXZ1 904 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 RALYQ9UKM9 306 aaKnown RBP3.86□□□□□ -1.79
VPS41-213ENST00000485955 A4GNTQ9UNA3 340 aa3.86□□□□□ -1.79
VPS41-213ENST00000485955 A0A1W2PQM1 296 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 ERVV-2B6SEH9 535 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 HOXC11O43248 304 aaPredicted RBP3.85□□□□□ -1.79
VPS41-213ENST00000485955 PYGLP06737 847 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 ITGA2P17301 1181 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 S1PR1P21453 382 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 MARK3P27448 753 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 GNAQP50148 359 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 HNRNPH2P55795 449 aaKnown RBP3.85□□□□□ -1.79
VPS41-213ENST00000485955 TRPC3Q13507 836 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 GPR68Q15743 365 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 SYT16Q17RD7 645 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 SLC9C2Q5TAH2 1124 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 RGMBQ6NW40 437 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 RRM2BQ7LG56 351 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 H2AFJQ9BTM1 129 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 NDST4Q9H3R1 872 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 PPP1R3EQ9H7J1 279 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 FBRSL1Q9HCM7 1045 aaKnown RBP3.85□□□□□ -1.79
VPS41-213ENST00000485955 HINT3Q9NQE9 182 aaKnown RBP3.85□□□□□ -1.79
VPS41-213ENST00000485955 KLHL1Q9NR64 748 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 MCM9Q9NXL9 1143 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 SCINQ9Y6U3 715 aa3.85□□□□□ -1.79
VPS41-213ENST00000485955 SMCHD1A6NHR9 2005 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 ASPDHA6ND91 283 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 RRN3P2A6NIE6 340 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 C16orf97H3BN30 126 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 SNAP23O00161 211 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 P2RY10O00398 339 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms