RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 LRIG2O94898 1065 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PCDH8O95206 1070 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 AP2A1O95782 977 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 RPN2P04844 631 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PRR23D2P0DMB1 279 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 GRK2P25098 689 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 NDST2P52849 883 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 CDH4P55283 916 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 ELP6Q0PNE2 266 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DGUOKQ16854 277 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 TEX44Q53QW1 395 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 FAXCQ5TGI0 409 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DENND1CQ8IV53 801 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 RGL4Q8IZJ4 473 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PTCD2Q8WV60 388 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 CNDP1Q96KN2 507 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 CEP44Q9C0F1 390 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 IL22Q9GZX6 179 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 MAGEH1Q9H213 219 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 LRMDAQ9H2I8 198 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 NDFIP2Q9NV92 336 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 TBX21Q9UL17 535 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 HNRNPCL2B2RXH8 293 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 TAF4O00268 1085 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 CNOT3O75175 753 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 PAGE1O75459 146 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 FYNP06241 537 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 VAV1P15498 845 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PTPN3P26045 913 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PTDSS1P48651 473 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 ERVK-21P61565 698 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PLOD1Q02809 727 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 CDH17Q12864 832 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 SLC10A2Q12908 348 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 ATP1A4Q13733 1029 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 INAVAQ3KP66 663 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 STEAP4Q687X5 459 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PTRHD1Q6GMV3 140 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 CD300LGQ6UXG3 332 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 TPGS1Q6ZTW0 290 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 NET1Q7Z628 596 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 ZNF280BQ86YH2 543 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 ARID3BQ8IVW6 561 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 CHPFQ8IZ52 775 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 ZNF567Q8N184 647 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DEPDC7Q96QD5 511 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 COG4Q9H9E3 785 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 C20orf96Q9NUD7 363 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 CACNG4Q9UBN1 327 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DCDC2Q9UHG0 476 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 APPL1Q9UKG1 709 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 CDYLQ9Y232 598 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 A0A1W2PQH9 124 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 TCRBV7S3A2A0A539 114 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 WASH4PA8MWX3 477 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 AIM2O14862 343 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PDE9AO76083 593 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 IGLV3-25P01717 112 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 AFF1P51825 1210 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 USP4Q13107 963 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 TEAD4Q15561 434 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 PDK4Q16654 411 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 ZC3H12BQ5HYM0 836 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 EOGTQ5NDL2 527 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DEPDC1Q5TB30 811 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 GRTP1Q5TC63 336 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 RTN4RL1Q86UN2 441 aaPredicted RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 RTL3Q8N8U3 475 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 IPMKQ8NFU5 416 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 CXorf40AQ8TE69 158 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DCAKDQ8WVC6 231 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 FATE1Q969F0 183 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 CASD1Q96PB1 797 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 DDX18Q9NVP1 670 aaKnown RBP7.68□□□□□ -1.18
USP54-210ENST00000466048 VANGL2Q9ULK5 521 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 FIS1Q9Y3D6 152 aa7.68□□□□□ -1.18
USP54-210ENST00000466048 LRRC72A6NJI9 287 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 H3BMM5 538 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 KPNA3O00505 521 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 FAM155BO75949 473 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 METTL18O95568 372 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 S100A9P06702 114 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 CA3P07451 260 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 PSMB4P28070 264 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 HTR1BP28222 390 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 HOXC13P31276 330 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 PBX3P40426 434 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MAGEA3P43357 314 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MSS51Q4VC12 460 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 IYDQ6PHW0 289 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 UNC5AQ6ZN44 842 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CDH24Q86UP0 819 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CACUL1Q86Y37 369 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 P3H2Q8IVL5 708 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CCNYL1Q8N7R7 359 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 FLCNQ8NFG4 579 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MSANTD3Q96H12 275 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 ZNF317Q96PQ6 595 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 CPNE1Q99829 537 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 GINS4Q9BRT9 223 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms