RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SPATA13Q96N96 652 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 CAMK1GQ96NX5 476 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 TMEM121Q9BTD3 319 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 MLPHQ9BV36 600 aaPredicted RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 ADGRE3Q9BY15 652 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 GBA3Q9H227 469 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 GPR27Q9NS67 375 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 CD84Q9UIB8 345 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 RPL26L1Q9UNX3 145 aaKnown RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 OR1A2Q9Y585 309 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 K7ESM1 405 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 LIASO43766 372 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 SH3BP5O60239 455 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 SDC3O75056 442 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 STK10O94804 968 aaKnown RBP13.37□□□□□ -0.27
VPS28-202ENST00000377348 FGGP02679 453 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 ATXN1LP0C7T5 689 aaKnown RBP13.37□□□□□ -0.27
VPS28-202ENST00000377348 CHRNA4P43681 627 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 OLIG2Q13516 323 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 FZD2Q14332 565 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 CDKN3Q16667 212 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 ITPRIPL1Q6GPH6 555 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 Q6ZVL8 140 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 TAB3Q8N5C8 712 aaPredicted RBP13.37□□□□□ -0.27
VPS28-202ENST00000377348 SLC25A41Q8N5S1 370 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 IPMKQ8NFU5 416 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 FAM174AQ8TBP5 190 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 DTD2Q96FN9 168 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 ERVMER34-1Q9H9K5 563 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 PNMA8BQ9ULN7 279 aaPredicted RBP13.37□□□□□ -0.27
VPS28-202ENST00000377348 SHOC2Q9UQ13 582 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 BTBD3Q9Y2F9 522 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 JRKLQ9Y4A0 524 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.37□□□□□ -0.27
VPS28-202ENST00000377348 SPEGQ15772 3267 aa13.37□□□□□ -0.27
VPS28-202ENST00000377348 C1orf232A0A0U1RR37 186 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 SPTY2D1-AS1A0A0U1RR47 76 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 LOC285095A0A1B0GVY8 99 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 C5orf60A6NFR6 353 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 PSMD11O00231 422 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 GIPC1O14908 333 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 KIF5CO60282 957 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 NDST3O95803 873 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 SLC4A1P02730 911 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 ZNF883P0CG24 379 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 EPHA8P29322 1005 aaPredicted RBP13.36□□□□□ -0.27
VPS28-202ENST00000377348 STC1P52823 247 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 THOP1P52888 689 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 EIF2B5Q13144 721 aaKnown RBP13.36□□□□□ -0.27
VPS28-202ENST00000377348 SLC14A1Q13336 389 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 MPP3Q13368 585 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 MTM1Q13496 603 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 OASLQ15646 514 aaKnown RBP13.36□□□□□ -0.27
VPS28-202ENST00000377348 LONRF2Q1L5Z9 754 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 LYSMD3Q7Z3D4 306 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 DGLUCYQ7Z3D6 616 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 TECPR1Q7Z6L1 1165 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 PIP4P1Q86T03 277 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 PRUNE1Q86TP1 453 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 DCP2Q8IU60 420 aaKnown RBP13.36□□□□□ -0.27
VPS28-202ENST00000377348 NAXDQ8IW45 347 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 EID2BQ96D98 161 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 LYSMD1Q96S90 227 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 APOOQ9BUR5 198 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 FICDQ9BVA6 458 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 DNAJC28Q9NX36 388 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 KLF15Q9UIH9 416 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 SPO11Q9Y5K1 396 aa13.36□□□□□ -0.27
VPS28-202ENST00000377348 CACNA1AO00555 2505 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 GOLGA6CA6NDK9 693 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 GOLGA6BA6NDN3 693 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 AURKAO14965 403 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 PCDHGA12O60330 932 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 DFNA5O60443 496 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 KCNK5O95279 499 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 METTL18O95568 372 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 AGTP01019 485 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 GOLGA6DP0CG33 693 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ZNF30P17039 623 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 RXRGP48443 463 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ARRB1P49407 418 aaPredicted RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 NOVA1P51513 510 aaKnown RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 GEMP55040 296 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 YPEL5P62699 121 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 SPARCL1Q14515 664 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 KCTD19Q17RG1 926 aaPredicted RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 SIRPB2Q5JXA9 342 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 FAXCQ5TGI0 409 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 KCTD16Q68DU8 428 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 CCDC70Q6NSX1 233 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 PSAPL1Q6NUJ1 521 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ESRP1Q6NXG1 681 aaKnown RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 PNCKQ6P2M8 343 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 DBX2Q6ZNG2 339 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ARHGEF18Q6ZSZ5 1173 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 PARGQ86W56 976 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 OXR1Q8N573 874 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 SAP25Q8TEE9 199 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 SETD7Q8WTS6 366 aaKnown RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 SCAMP4Q969E2 229 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms